BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD09FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1607 773 0.0
>3x_Contig1607
Length = 10159
Score = 773 bits (390), Expect = 0.0
Identities = 427/438 (97%), Gaps = 1/438 (0%)
Strand = Plus / Minus
Query: 71 taatcaaacgctgtgaagaacttgatgaaccaattcctcatgatgagcacttatccgata 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5010 taatcaaacgctgtgaagaacttgatgaaccaattcctcatgatgagcacttatccgata 4951
Query: 131 tgaaccctcaattcaaatatatgtactaatacccccccccccaccttcttagtcagagtc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950 tgaaccctcaattcaaatatatgtactaatacccccccccccaccttcttagtcagagtc 4891
Query: 191 aaaaattaaaacaaagaacttcgaacggtttccttatctgaacttacaacattgtatttt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4890 aaaaattaaaacaaagaacttcgaacggtttccttatctgaacttacaacattgtatttt 4831
Query: 251 attagtattaggtttgtattaatgtataaattaaagattacacgactttttattgtggcc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4830 attagtattaggtttgtattaatgtataaattaaagattacacgactttttattgtggcc 4771
Query: 311 ttttttctagtagtacatatagtctcttctattatcaaggcattcattaatattgaatgt 370
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4770 ttttttctagtagtacatatagtctcttctattatcaaggcattcataaatattgaatgt 4711
Query: 371 tgtatcatgagaattatttggccgttaacattattcggtgtggatggaatgccatagtgg 430
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 4710 tgtatcatgagaattattt-gccgttaacatcatccggtgtggatggaatgccatagtgg 4652
Query: 431 aaatgaaaggcgatgatcttggaccattagtcatcccactaattgggcctgaaggagagg 490
||||||||||||||||||||| |||| ||||||||||||||||||| |||||| ||||||
Sbjct: 4651 aaatgaaaggcgatgatcttgcaccagtagtcatcccactaattggtcctgaatgagagg 4592
Query: 491 aaacgggatttttaaagg 508
|| || |||| |||||||
Sbjct: 4591 aaccgtgattcttaaagg 4574
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8211
Number of Sequences: 1807
Number of extensions: 8211
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)