BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD09RM1.SCF screened BAC_end
(1003 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 971 0.0
>3x_Contig1770
Length = 29267
Score = 971 bits (490), Expect = 0.0
Identities = 530/538 (98%), Gaps = 4/538 (0%)
Strand = Plus / Minus
Query: 84 ctttaacctctacc-tatctgctctttaggatctaccatctggcagctcctctggtcgtt 142
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19411 ctttaacctctaccatatctgctctttaggatctaccatctggcagctcctctggtcgtt 19352
Query: 143 attctcaattgcacatagatagtcaatccagagttggctgtcatcgttccggcttggtag 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19351 attctcaattgcacatagatagtcaatccagagttggctgtcatcgttccggcttggtag 19292
Query: 203 ttatactggttcccgcagtttctatacttaagtgtcaaagattgcttcaaatgtattgtg 262
||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct: 19291 ttatactggttcccgcagtttctatacttaagtgtcaaagattgcttcaaaag-agtgtg 19233
Query: 263 tcggacatattaccatagtaccaccaagacaggaacgcgactcggaaactcagtatgatt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19232 tcggacatattaccatagtaccaccaagacaggaacgcgactcggaaactcagtatgatt 19173
Query: 323 atgttccgttcactatcagtgacacctgtttggaaggctggtttaagcttatcacatcgt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19172 atgttccgttcactatcagtgacacctgtttggaaggctggtttaagcttatcacatcgt 19113
Query: 383 tcgattcctattaactccagattatcatcggtgaggaattatatctcaatcggatgtgct 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19112 tcgattcctattaactccagattatcatcggtgaggaattatatctcaatcggatgtgct 19053
Query: 443 aataaaacgggcagcaggcttcttcgttccgcaggggtatcaagtcagtacaaagatttc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19052 aataaaacgggcagcaggcttcttcgttccgcaggggtatcaagtcagtacaaagatttc 18993
Query: 503 aggaggtttaacagttccagtaatggtaatggtacccgacaagaatgctttctgttgcac 562
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 18992 aggaggtttaacagttccagtaatggtaatggta-ccgacaagaatgc-ttctgttgcac 18935
Query: 563 cgaaaactgaagtcaagaagattgttcccccaaaaccctcaactaatggtaaatcaaa 620
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 18934 cgaaaactgaggtcaagaagattgttcccccaaaaccatcaactaatggtaaatcaaa 18877
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8157
Number of Sequences: 1807
Number of extensions: 8157
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 1003
length of database: 10,358,551
effective HSP length: 16
effective length of query: 987
effective length of database: 10,329,639
effective search space: 10195353693
effective search space used: 10195353693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)