BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD10FM1.SCF screened BAC_end
(994 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 504 e-142
>3x_Contig1509
Length = 8584
Score = 504 bits (254), Expect = e-142
Identities = 331/349 (94%), Gaps = 6/349 (1%)
Strand = Plus / Plus
Query: 86 attcactcttcctttggagattgtcactaagttcaataattatgtgtaatcatcgtttaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7061 attcactcttcctttggagattgtcactaagttcaataattatgtgtaatcatcgtttaa 7120
Query: 146 tatgtagaaataaaatatctatacttcacttttttttcaagctcgctgtttgtcttcatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7121 tatgtagaaataaaatatctatacttcacttttttttcaagctcgctgtttgtcttcatt 7180
Query: 206 cgatattatctttgatgtgcaatatcgatttcaatgaactagagtcgattagctgtaaga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7181 cgatattatctttgatgtgcaatatcgatttcaatgaactagagtcgattagctgtaaga 7240
Query: 266 gtttggatcgcttttcttctgttaaatcaggccaagttttcaaaattaattcgagatttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7241 gtttggatcgcttttcttctgttaaatcaggccaagttttcaaaattaattcgagatttt 7300
Query: 326 gagccaantcctttccattcccatttggatcttaatttgcccattgtcttatttccacca 385
||||| | | ||||||||| ||||||||||| | || | ||||||||| | |||||| |
Sbjct: 7301 gagcc-agttctttccatt-ccatttggatc-tcatctcgccattgtctcagttccacaa 7357
Query: 386 c-gattacatggaaatggatatcctggtaattaaacataagtatttgtt 433
| ||| |||||| ||| ||||||||||||||| ||||| ||||||||||
Sbjct: 7358 cggataacatgg-aattgatatcctggtaatt-aacatcagtatttgtt 7404
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,563
Number of Sequences: 1807
Number of extensions: 25563
Number of successful extensions: 542
Number of sequences better than 1.0e-20: 1
length of query: 994
length of database: 10,358,551
effective HSP length: 16
effective length of query: 978
effective length of database: 10,329,639
effective search space: 10102386942
effective search space used: 10102386942
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)