BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD10RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1145 636 0.0
>3x_Contig1145
Length = 5226
Score = 636 bits (321), Expect = 0.0
Identities = 338/341 (99%), Gaps = 2/341 (0%)
Strand = Plus / Minus
Query: 46 atctacatgtcagaaccagtgatggagaatatggcacctgaagatgtggtaaaacttgag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4263 atctacatgtcagaaccagtgatggagaatatggcacctgaagatgtggtaaaacttgag 4204
Query: 106 aaagaagaacatattgtaccggatattggcgtctcttcgatttctaccactgaacccctg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4203 aaagaagaacatattgtaccggatattggcgtctcttcgatttctaccactgaacccctg 4144
Query: 166 tctccatcgggtataccaagggaatcatctggaactgttacctctgcaactgcagctaca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4143 tctccatcgggtataccaagggaatcatctggaactgttacctctgcaactgcagctaca 4084
Query: 226 acagaaagagaagtatcacccaagaaggaactacaaattgatcatgatcgtgttgatcca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4083 acagaaagagaagtatcacccaagaaggaactacaaattgatcatgatcgtgttgatcca 4024
Query: 286 gtagcgatgatcggtgggtcaaccactagaagatatttgaatgaacatgtaacaaaacat 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4023 gtagcgatgatcggtgggtcaaccactagaagatatttgaatgaacatgtaacaaaaca- 3965
Query: 346 tttattggaagggatgaaaactgatagccagagaaaagccc 386
|||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 3964 tttattggaaggaatg-aaactgatagccagagaaaagccc 3925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,543
Number of Sequences: 1807
Number of extensions: 11543
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)