BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD11FM1.SCF screened BAC_end
(879 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1187 946 0.0
>3x_Contig1187
Length = 6482
Score = 946 bits (477), Expect = 0.0
Identities = 601/632 (95%), Gaps = 8/632 (1%)
Strand = Plus / Minus
Query: 89 cgttaggattaaaagaagttgtggtactagtactaacatttcttaaatcaggaaactcaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2204 cgttaggattaaaagaagttgtggtactagtactaacatttcttaaatcaggaaactcaa 2145
Query: 149 tattgttaggtaagacaaaggcttcagaagttcttgtgccattattcaaagtatcgcggt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2144 tattgttaggtaagacaaaggcttcagaagttcttgtgccattattcaaagtatcgcggt 2085
Query: 209 tcgaagtttttttgtctccattgaatttcttgatgtcggaggagttcataacgattttgc 268
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2084 tcgaagtcagcatgtctccattgaatttcttgatgtcggaggagttcataacgattttgc 2025
Query: 269 tactagaattgaaatatactgaagcatttacgttgattctgaagacgaccttaatcaact 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2024 tactagaattgaaatatactgaagcatttacgttgattctgaagacgaccttaatcaact 1965
Query: 329 ttctcaaaattttcctaatatcctttacaacattccttttgataagttcttttctcgcta 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1964 ttctcaaaattttcctaatatcctttacaacattccttttgataagttcttttctcgcta 1905
Query: 389 agttacaggccaactgatggtaaaagatgtaagttgacgctgtcgaaaagttctgataaa 448
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 1904 agttacaggccaactgatggtaaaagatgtaagttgncgctttcgaaaagttctgataaa 1845
Query: 449 atgatggttggtttatgtttgaagaaatggttatgtgaagctttcaaataatagatagtg 508
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1844 atgatggttggttt-tgtttgaagaaatggttatgtgaagctttcaaataatagatagt- 1787
Query: 509 ggagtttttt-actccgtccacgttttcatgtcaaaacttaatg-ataaaacattttact 566
|||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct: 1786 ggagttttttaactccgtccacgttttcatgtcagaacttaatgaataaaacattctact 1727
Query: 567 attcgattgcggtaatggtttaagaacaagtggctgtgattttttcggacctg-tttttc 625
|||||||||||||||||||||| || ||||||||||||| ||||||||||||| || |||
Sbjct: 1726 attcgattgcggtaatggtttaggagcaagtggctgtgagtttttcggacctgcttcttc 1667
Query: 626 a-ttttttcattggattgcctaggattt-aaagcatactgggtgatcgaacttgaaatgg 683
| |||||||| |||||||| |||||||| || ||||||||||||||||| || || ||||
Sbjct: 1666 atttttttcagtggattgcgtaggatttgaatgcatactgggtgatcgacctggagatgg 1607
Query: 684 acaggtttgaatttagtcttggttttggacca 715
||||| |||| || ||| |||||||||||||
Sbjct: 1606 acagggttgacttaggtc-tggttttggacca 1576
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,869
Number of Sequences: 1807
Number of extensions: 12869
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 879
length of database: 10,358,551
effective HSP length: 16
effective length of query: 863
effective length of database: 10,329,639
effective search space: 8914478457
effective search space used: 8914478457
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)