BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD11RM1.SCF screened BAC_end
(884 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1200 813 0.0
>3x_Contig1200
Length = 5130
Score = 813 bits (410), Expect = 0.0
Identities = 470/486 (96%), Gaps = 3/486 (0%)
Strand = Plus / Plus
Query: 47 tatgtggatacttttgcca-cgacgtttctattatttccatttacttagataagtcccaa 105
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2735 tatgtggatacttttgccaacgacgtttctattatttccatttacttagataagtcccaa 2794
Query: 106 caagatcatgacatcttgaaagaattgggattgtcgttgttacaagtggaaagagaagcc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2795 caagatcatgacatcttgaaagaattgggattgtcgttgttacaagtggaaagagaagcc 2854
Query: 166 tctttattatatgcaattcctcaaaactcgttcaaagacttgtattaattcatacaattc 225
||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct: 2855 tctttattatatgcaattcctcaaaactcgttcaaagacttgtatcaatccagacaattc 2914
Query: 226 tctccacaagaatccatctatgcgcatatcggttccatcttcatcaaccatttcattaac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2915 tctccacaagaatccatctatgcgcatatcggttccatcttcatcaaccatttcattaac 2974
Query: 286 cgtcttggttccagttacgattctttaatcaggcaattaaacgtaaaaccagatgatact 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2975 cgtcttggttccagttacgattctttaatcaggcaattaaacgtaaaaccagatgatact 3034
Query: 346 ttgttgaacgaactcttagctaatttgaagcgtaagttgagaactgaaacttacactcaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3035 ttgttgaacgaactcttagctaatttgaagcgtaagttgagaactgaaacttacactcaa 3094
Query: 406 caaatgatcatacacgtccttcacaagtacaaggaaaattgtattaaagttattccaatc 465
|||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||
Sbjct: 3095 caaatgatcatacacgtccttcacaagtacaagg-aaattgtatcaaagttatacaaatc 3153
Query: 466 gttttgttcaagtccattatcctacaaagacttctgctatgggttctggaaaccaacaat 525
| |||| |||||||||||||||||||||||||||||||| || ||||| |||||| |||
Sbjct: 3154 g-tttgctcaagtccattatcctacaaagacttctgctactgggtctggtaaccaaaaat 3212
Query: 526 cgcaaa 531
|||||
Sbjct: 3213 tgcaaa 3218
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,642
Number of Sequences: 1807
Number of extensions: 14642
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 884
length of database: 10,358,551
effective HSP length: 16
effective length of query: 868
effective length of database: 10,329,639
effective search space: 8966126652
effective search space used: 8966126652
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)