BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD12FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig994 718 0.0
>3x_Contig994
Length = 4780
Score = 718 bits (362), Expect = 0.0
Identities = 409/420 (97%), Gaps = 4/420 (0%)
Strand = Plus / Minus
Query: 91 taatagatgtagtatccactctgaaacaaatgaaagcatatgagtatgcctaaccatctc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2492 taatagatgtagtatccactctgaaacaaatgaaagcatatgagtatgcctaaccatctc 2433
Query: 151 attatcctttcgaaaattgtcgaccggtgttcacttgaagattaaggttcttattgctcc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2432 attatcctttcgaaaattgtcgaccggtgttcacttgaagattaaggttcttattgctcc 2373
Query: 211 at-ccgtgcttng-atttttttgtttgnttttgtgctgtttacccagaaaagccaaagct 268
|| |||||| | | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2372 ataccgtgcaccgcacttttttgtttgtttttgtgctgtttacccagaaaagccaaagct 2313
Query: 269 ttctcgaagtataaacaaactaatctcttttaattatttcaaccgttaggagctaaacat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2312 ttctcgaagtataaacaaactaatctcttttaattatttcaaccgttaggagctaaacat 2253
Query: 329 cagctgtaggtactgtgctaagtatattggttaattcatcataaggtacatcaatactct 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 cagctgtaggtactgtgctaagtatattggttaattcatcataaggtacatcaatactct 2193
Query: 389 tacagtgtgtggatacttttgctgcaacgataccatctaaacttaaaggcagcttccttt 448
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2192 tacagtgtgtggatacttttgctgcaacgataccatctaaacttaaaggcagctcccttt 2133
Query: 449 ccttagcctcaatacacctttcttatttgatgcttggaatctgatggagttgtaccactt 508
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 2132 ccttagcctcaataca-ctttcttatttgatgcttgg-atctgatggagttgtacgactt 2075
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8713
Number of Sequences: 1807
Number of extensions: 8713
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)