BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZD12RM1.SCF screened BAC_end
(1059 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 785 0.0
>3x_Contig1687
Length = 12800
Score = 785 bits (396), Expect = 0.0
Identities = 446/460 (96%), Gaps = 2/460 (0%)
Strand = Plus / Minus
Query: 107 catcccatgtagggcaagaaaaagtaagacaaagagatcacataaagatggaaaagatga 166
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4094 catcccatg-agggcaagaaaa-gtaagacaaagagatcacataaagatggaaaagatga 4037
Query: 167 gtacacgttgttcttggaaaagaagttgaaatatctagaaaaattagttgacatgaaacc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4036 gtacacgttgttcttggaaaagaagttgaaatatctagaaaaattagttgacatgaaacc 3977
Query: 227 agatacgaactcgtataaagagaaactcagcaaatacaagattgttgctcatcttttgga 286
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3976 agatacgaactcgtataaagagaaactcagcaaatacaagaaggttgctcatcttttgga 3917
Query: 287 caacggagaacctgatcaggatgatataacaactgtgcttcctcccacggcggcacaaca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3916 caacggagaacctgatcaggatgatataacaactgtgcttcctcccacggcggcacaaca 3857
Query: 347 aactgcaccttctaatacacttgctgctttgctatcacagcagccgaatggggcagcagg 406
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3856 aactgcaccttctaatacacttgctgcttcgctatcacagcagccgaatggggcagcagg 3797
Query: 407 ggtagctcaggatcaacagataacgaggattaggtcacctatactacctccgcctccgaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3796 ggtagctcaggatcaacagataacgaggattaggtcacctatactacctccgcctccgaa 3737
Query: 467 aactaagtttttacctctacattaacagtcttaaaatttaccacaacgttctggcttgat 526
|||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||
Sbjct: 3736 aactaagtttttacctctacatcaacagtctcaaaatcaaccacaacgttctggcatgat 3677
Query: 527 taagcctcctcatttctatgaacgatcattggaatcctta 566
|||||||||||||| |||||||| ||||||||||||||
Sbjct: 3676 taagcctcctcattctcatgaacgagcattggaatcctta 3637
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,276
Number of Sequences: 1807
Number of extensions: 12276
Number of successful extensions: 123
Number of sequences better than 1.0e-20: 1
length of query: 1059
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1043
effective length of database: 10,329,639
effective search space: 10773813477
effective search space used: 10773813477
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)