BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE01FM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1569 807 0.0
>3x_Contig1569
Length = 11625
Score = 807 bits (407), Expect = 0.0
Identities = 450/462 (97%), Gaps = 2/462 (0%)
Strand = Plus / Minus
Query: 75 acatactctgagatccagtggatagtgaattctgttgaaaagtttggcattacaatttcg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9438 acatactctgagatccagtggatagtgaattctgttgaaaagtttggcattacaatttcg 9379
Query: 135 tgcttctgaatatttgaaccttttcaaatgaatagccaaagtttttggtaaagacttcaa 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9378 tgcttctgaatatttgaaccttttcaaatgaatagccaaagtttttggtaaagacttcaa 9319
Query: 195 tcccacattnactcntagcttcttgtaagccacaacatttatcgcagtaaaatttattgg 254
||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9318 tcccacagt-acgctcagcttcttgtaagccacaacatttatcgcagtaaaatttattgg 9260
Query: 255 caccagttaataactcgcgatgtttgtagttgtttaaaatgtcttgaattttgatttctt 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9259 caccagttaataactcgcgatgtttgtagttgtttaaaatgtcttgaattttgatttctt 9200
Query: 315 cgtcttcctgaatctcaataggaaaatctaaaaatggttcatctcttgcagtgatagtat 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9199 cgtcttcctgaatctcaataggaaaatctaaaaatggttcatctcttgcagtgatagtat 9140
Query: 375 cgcaagtaaaacatttagtactattgcataatgaccctttgaacagatcctcgataaatg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9139 cgcaagtaaaacatttagtactattgcataatgaccctttgaacagatcctcgataaatg 9080
Query: 435 tcggttttgattcaagtttatcagtatccagttccatatttttttttaaagtattacctt 494
||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |||
Sbjct: 9079 tcggttttgattcaagtttatcagtatccagttccatatctctttttaaagtatca-ctt 9021
Query: 495 aattcggtcaataaataatttaaaaaattatgtgcgtcctga 536
|||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 9020 aattcgttcaataaataatttaaaaattcatgtgcgtcctga 8979
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9207
Number of Sequences: 1807
Number of extensions: 9207
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)