BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZE01RM1.SCF screened BAC_end
         (981 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1599                                                        1178   0.0  

>3x_Contig1599 
          Length = 10178

 Score = 1178 bits (594), Expect = 0.0
 Identities = 654/666 (98%), Gaps = 6/666 (0%)
 Strand = Plus / Minus

                                                                        
Query: 78   cttcccaat-gggtgaaaccttttcttggaaaga-atctgaatcctggatcattgaacat 135
            ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6268 cttcccaattgggtgaaaccttttcttggaaagatatctgaatcctggatcattgaacat 6209

                                                                        
Query: 136  tcagtggtcgataccaagaagggagaaatgctgacttatactaggaatttagatcatacg 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6208 tcagtggtcgataccaagaagggagaaatgctgacttatactaggaatttagatcatacg 6149

                                                                        
Query: 196  aagattataaaagtggaagaatatactaggtttgaaaaagacgggaatagcactcaggtg 255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6148 aagattataaaagtggaagaatatactaggtttgaaaaagacgggaatagcactcaggtg 6089

                                                                        
Query: 256  aaatccatggtcaagttcagtagtggatttgggattgggattagaaacagaatcgagagc 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6088 aaatccatggtcaagttcagtagtggatttgggattgggattagaaacagaatcgagagc 6029

                                                                        
Query: 316  tggtcacatagcaagttcgatgagaatattcagaagagcaggaagggcatgactttcgtt 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6028 tggtcacatagcaagttcgatgagaatattcagaagagcaggaagggcatgactttcgtt 5969

                                                                        
Query: 376  ttgcaaagactggatctctcgttaaacaaaacttcgagctgaaaacggtttatttggcct 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5968 ttgcaaagactggatctctcgttaaacaaaacttcgagctgaaaacggtttatttggcct 5909

                                                                        
Query: 436  attctccttctgctttccagttatttatttgcatttactaccatacaagcatcgaacaac 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5908 attctccttctgctttccagttatttatttgcatttactaccatacaagcatcgaacaac 5849

                                                                        
Query: 496  aaacaatatatatactagagacatggactctcaatttacttcgtcgggtttatcttttaa 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5848 aaacaatatatatactagagacatggactctcaatttacttcgtcgggtttatcttttaa 5789

                                                                        
Query: 556  ccttccaggacttttatttatatcacaagaagcagagcagatcaaccagtaaaaaaaatg 615
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5788 cctcccaggacttttatttatatcacaagaagcagagcagatcaaccagtaaaaaaaatg 5729

                                                                        
Query: 616  actagctaaacgttaatcacatatttatcaatataccagggcaagttccttgttagtatt 675
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5728 acgagctaaacgttaatcacatatttatcaatataccagggcaagttccttgttagtatt 5669

                                                                        
Query: 676  attttgatctccttattgtaaattgtcctctttgcttttgaaacttaaatcgtttattac 735
            | ||||||||| ||||||||||| || ||  |||| |||||||| |||||||||||||||
Sbjct: 5668 a-tttgatctcattattgtaaatagt-ctacttgc-tttgaaac-taaatcgtttattac 5613

                  
Query: 736  atattt 741
            ||||||
Sbjct: 5612 atattt 5607


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,485
Number of Sequences: 1807
Number of extensions: 22485
Number of successful extensions: 222
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)