BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE02FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1637 948 0.0
>3x_Contig1637
Length = 14855
Score = 948 bits (478), Expect = 0.0
Identities = 532/545 (97%), Gaps = 4/545 (0%)
Strand = Plus / Plus
Query: 291 agcccgtctccactctaatattcgaatcgtgaaaaaccgttgattttgacccctctcttc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 agcccgtctccactctaatattcgaatcgtgaaaaaccgttgattttgacccctctcttc 63
Query: 351 caaatcgaaaaaaagtaagcagcggagaaaataagacactctctcattgaaagaattcaa 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 caaatcgaaaaaaagtaagcagcggagaaaataagacactctctcattgaaagaattcaa 123
Query: 411 ttgttcaaacctgttttcacatacacatatataaaggattgtgtgttcacaattggtgca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ttgttcaaacctgttttcacatacacatatataaaggattgtgtgttcacaattggtgca 183
Query: 471 acttggtgggctagatggcatcttcgatcagtgctgcaaaaactgacaattgtggtactg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 acttggtgggctagatggcatcttcgatcagtgctgcaaaaactgacaattgtggtactg 243
Query: 531 ataatatagcaactggacggtcgatgggtcaaggattggttgcggaggaggagatagata 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ataatatagcaactggacggtcgatgggtcaaggattggttgcggaggaggagatagata 303
Query: 591 aagtactcaagcaggatgtcggagatgcagtgacagcaacagctggcacggcagctgtcg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aagtactcaagcaggatgtcggagatgcagtgacagcaacagctggcacggcagctgtcg 363
Query: 651 ctgccgtagcgtctggttctgtcactgtcagttcgggcgtgaactncggttgtagttcta 710
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 364 ctgccgtagcgtctggttctgtcactgtcagttcgggcgtgaactccggttgtagttcta 423
Query: 711 gatcccgcgctatagacttggaaggttcttcgagccgacatggacttaatattgtaaggg 770
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 424 gatccggcgctatagacttggaaggttcttcgagccgacatggacttagtattgtaaggg 483
Query: 771 gagaaggggcatttcaccgataccagaattacagcctttgagtggtgccattggcttggg 830
|| |||||||||||| |||||| |||||||| | |||||||||| ||||||| ||||
Sbjct: 484 aag-aggggcatttcaacgatacagaaattacag-cattgagtggtg-cattggc-tggg 539
Query: 831 ttctt 835
|||||
Sbjct: 540 ttctt 544
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5493
Number of Sequences: 1807
Number of extensions: 5493
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)