BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE02RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1455 1100 0.0
3x_Contig1513 383 e-106
>3x_Contig1455
Length = 9095
Score = 1100 bits (555), Expect = 0.0
Identities = 586/594 (98%), Gaps = 2/594 (0%)
Strand = Plus / Minus
Query: 286 aatctatgattttgtttacaacatagccttgtaccatggcttg-tcgtcatgttgcaaag 344
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9095 aatctatgattttgtttacaacatagccttgtaccatggcttggtcgtcatgttgcaaag 9036
Query: 345 catcgacatcgtactctgcacc-tcttcttgaagatgggacccatgatgaagatttccat 403
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 9035 catcgacatcgtactctgcaccctcttcttgaagatggaacccatgatgaagatttccat 8976
Query: 404 ggtaggacaccttcagagtacatttcattaacttcttccaaagttagacccttggtttca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8975 ggtaggacaccttcagagtacatttcattaacttcttccaaagttagacccttggtttca 8916
Query: 464 ggaacgaagaagtagacgtagaagaaggcgaataccatacaacccataaagacgtaaccg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8915 ggaacgaagaagtagacgtagaagaaggcgaataccatacaacccataaagacgtaaccg 8856
Query: 524 tagtagaagtgaatagcagatgtaataaatggtgtgaagaacccaatcaggaaaccccag 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8855 tagtagaagtgaatagcagatgtaataaatggtgtgaagaacccaatcaggaaaccccag 8796
Query: 584 atccagttcgaggcggaagcgatagccattgccttacccttaactctaagtggataggat 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8795 atccagttcgaggcggaagcgatagccattgccttacccttaactctaagtggataggat 8736
Query: 644 tcggagataaccacgtatgcgattggagcccaagtagtagcgaaacagaagatataaaag 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8735 tcggagataaccacgtatgcgattggagcccaagtagtagcgaaacagaagatataaaag 8676
Query: 704 cacgcaaagacaatcatacagttaccagcacccttggaagaaatatcangatgatctgga 763
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8675 cacgcaaagacaatcatacagttaccagcacccttggaagaaatatcaggatgatctgga 8616
Query: 764 ccgtctggccataatctttgtacaccaacagatgcataaacaacgttacatgcaaccata 823
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 8615 ccgtctggccataatcttgtaacaccaacagatgcataaacaacgtaacatgcaaccata 8556
Query: 824 ccaacacaaccgtataatagacagttacgacgaccgaaatgatcaactgtgtat 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8555 ccaacacaaccgtataatagacagttacgacgaccgaaatgatcaactgtgtat 8502
>3x_Contig1513
Length = 11967
Score = 383 bits (193), Expect = e-106
Identities = 204/208 (98%)
Strand = Plus / Minus
Query: 43 gcttttatcatgaagtagtaataataacccagacagtagtcttcacaaagaccatgcaaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gcttttatcatgaagtagtaataataacccagacagtagtcttcacaaagaccatgcaaa 149
Query: 103 gtaattgattggggaagtcaatgggattaataatgatcaaagacaaaaacatcacaaaag 162
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 148 gtaattgattggggaagtcaatgggattaataatgatcaaagacanaaacatcacaaaag 89
Query: 163 gaggagaagagaagggaaccaatattttctggttctatatttcgtttataattaagttct 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 88 gaggagaagagaagggaaccaatattttctggttctatatttcgtttataatttaagtct 29
Query: 223 cctaagacctctctcagtttgtgactac 250
||||||||||||||||||||||||||||
Sbjct: 28 cctaagacctctctcagtttgtgactac 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6034
Number of Sequences: 1807
Number of extensions: 6034
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)