BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE03FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1752 1068 0.0
>3x_Contig1752
Length = 22471
Score = 1068 bits (539), Expect = 0.0
Identities = 619/643 (96%), Gaps = 2/643 (0%)
Strand = Plus / Minus
Query: 86 tgtaaagatccgacatgtataaagaataaagtaaaggcattgttttcgttttccattgta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13149 tgtaaagatccgacatgtataaagaataaagtaaaggcattgttttcgttttccattgta 13090
Query: 146 ttactagtgattatcagagcgtttgacaggtatctcttctcatttctaatgatcgaagag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13089 ttactagtgattatcagagcgtttgacaggtatctcttctcatttctaatgatcgaagag 13030
Query: 206 ctgggtttatttctttttcactaaggacattttctcatcattaaactaattatggagaag 265
|||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13029 ctgggtttatagcattgtcactaaggacattttctcatcattaaactaattatggagaag 12970
Query: 266 ccctctcctctatcttcaatgtctttcctagcggaagtacacgatgcttctgctgaagca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12969 ccctctcctctatcttcaatgtctttcctagcggaagtacacgatgcttctgctgaagca 12910
Query: 326 cctaagtaacttgatcttagtggtttaaattcgattaccgaatgcttcgagtatggaaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12909 cctaagtaacttgatcttagtggtttaaattcgattaccgaatgcttcgagtatggaaac 12850
Query: 386 gatccgcatttaatctgaatggtatttttaatcgatctttgtcaagtatcaagttgcatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12849 gatccgcatttaatctgaatggtatttttaatcgatctttgtcaagtatcaagttgcatc 12790
Query: 446 aatgtgttcgagttcttatacatttgaaagaaaacttcaaaaaaaaaaaattcgaaaaga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12789 aatgtgttcgagttcttatacatttgaaagaaaacttcaaaaaaaaaaaattcgaaaaga 12730
Query: 506 aaaaaaaaaacacatccaaactggcgttcatgaaattcttacatgaattagggttacaaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12729 aaaaaaaaaacacatccaaactggcgttcatgaaattcttacatgaattagggttacaaa 12670
Query: 566 gtgatgtggaagaaaagccatttgcagaagtctctgctttgagttgtcagctttgatgcc 625
||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 12669 gtgatgtggaagaaaggccatttgcagaagtctctgcttcgagttgtcagcttgaatgcc 12610
Query: 626 tttgctttgaagtcccatgatttaaatcttattcccttaaaaaaatttgttccgattttt 685
||||||||||||||||||||| ||||| |||||| |||||||||| || | ||| || |
Sbjct: 12609 -ttgctttgaagtcccatgattaaaatcatattccattaaaaaaatatg-tacgaattat 12552
Query: 686 ccaccaaggatggagggccttaacccctgacaaccaaaaagtt 728
||| ||||||||||||| |||| | ||||||| ||||||||
Sbjct: 12551 acacaaaggatggagggcactaacacatgacaacaaaaaagtt 12509
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,346
Number of Sequences: 1807
Number of extensions: 20346
Number of successful extensions: 300
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)