BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZE04RM1.SCF screened BAC_end
         (939 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1724                                                         781   0.0  

>3x_Contig1724 
          Length = 20938

 Score =  781 bits (394), Expect = 0.0
 Identities = 426/434 (98%), Gaps = 2/434 (0%)
 Strand = Plus / Minus

                                                                         
Query: 46    cgagatgctttagtacagaagaaacaactcgaagccaagtggaatagtttagagcaagag 105
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11077 cgagatgctttagtacagaagaaacaactcgaagccaagtggaatagtttagagcaagag 11018

                                                                         
Query: 106   gtatacgataaagaaacagagtatctatcacagaaaccatcttccagaatggggaacatt 165
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11017 gtatacgataaagaaacagagtatctatcacagaaaccatcttccagaatggggaacatt 10958

                                                                         
Query: 166   ctgctcgggtttcagggtttcaacaagagcagttctgcgcagcagatattgtctgaccac 225
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10957 ctgctcgggtttcagggtttcaacaagagcagttctgcgcagcagatattgtctgaccac 10898

                                                                         
Query: 226   tcacattcgtcaaatgcccagccattggacgataatgatcgcattttttcattaagttcg 285
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10897 tcacattcgtcaaatgcccagccattggacgataatgatcgcattttttcattaagttcg 10838

                                                                         
Query: 286   tacctttttgcaaaacaattggctgcttccaatcatcaagaacaaacgaagtccaatgat 345
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10837 tacctttttgcaaaacaattggctgcttccaatcatcaagaacaaacgaagtccaatgat 10778

                                                                         
Query: 346   tgaacaggaagcttatctgtttgccctcttcactgagacatattcaggtcccagacaccc 405
             ||||||||||||||||||||||||||||||||||||||||||| |||||||  |||| ||
Sbjct: 10777 tgaacaggaagcttatctgtttgccctcttcactgagacatatccaggtccaggaca-cc 10719

                                                                         
Query: 406   ggacaccagagaccagagaccagagacaagagaaactaagggagggggaaagaaaaacgg 465
             |||||| |||||| |||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 10718 ggacacaagagacaagagacaagagacaagagaaactaagggaggggg-aagaaaaacgg 10660

                           
Query: 466   tattattttacccc 479
             ||||||||||||||
Sbjct: 10659 tattattttacccc 10646


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,509
Number of Sequences: 1807
Number of extensions: 23509
Number of successful extensions: 2544
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)