BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZE04RM1.SCF screened BAC_end (939 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1724 781 0.0 >3x_Contig1724 Length = 20938 Score = 781 bits (394), Expect = 0.0 Identities = 426/434 (98%), Gaps = 2/434 (0%) Strand = Plus / Minus Query: 46 cgagatgctttagtacagaagaaacaactcgaagccaagtggaatagtttagagcaagag 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11077 cgagatgctttagtacagaagaaacaactcgaagccaagtggaatagtttagagcaagag 11018 Query: 106 gtatacgataaagaaacagagtatctatcacagaaaccatcttccagaatggggaacatt 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11017 gtatacgataaagaaacagagtatctatcacagaaaccatcttccagaatggggaacatt 10958 Query: 166 ctgctcgggtttcagggtttcaacaagagcagttctgcgcagcagatattgtctgaccac 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10957 ctgctcgggtttcagggtttcaacaagagcagttctgcgcagcagatattgtctgaccac 10898 Query: 226 tcacattcgtcaaatgcccagccattggacgataatgatcgcattttttcattaagttcg 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10897 tcacattcgtcaaatgcccagccattggacgataatgatcgcattttttcattaagttcg 10838 Query: 286 tacctttttgcaaaacaattggctgcttccaatcatcaagaacaaacgaagtccaatgat 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10837 tacctttttgcaaaacaattggctgcttccaatcatcaagaacaaacgaagtccaatgat 10778 Query: 346 tgaacaggaagcttatctgtttgccctcttcactgagacatattcaggtcccagacaccc 405 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || Sbjct: 10777 tgaacaggaagcttatctgtttgccctcttcactgagacatatccaggtccaggaca-cc 10719 Query: 406 ggacaccagagaccagagaccagagacaagagaaactaagggagggggaaagaaaaacgg 465 |||||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 10718 ggacacaagagacaagagacaagagacaagagaaactaagggaggggg-aagaaaaacgg 10660 Query: 466 tattattttacccc 479 |||||||||||||| Sbjct: 10659 tattattttacccc 10646 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,509 Number of Sequences: 1807 Number of extensions: 23509 Number of successful extensions: 2544 Number of sequences better than 1.0e-20: 1 length of query: 939 length of database: 10,358,551 effective HSP length: 16 effective length of query: 923 effective length of database: 10,329,639 effective search space: 9534256797 effective search space used: 9534256797 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)