BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE05FM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1120 1320 0.0
>3x_Contig1120
Length = 3902
Score = 1320 bits (666), Expect = 0.0
Identities = 745/765 (97%), Gaps = 5/765 (0%)
Strand = Plus / Plus
Query: 85 tttctacaacaggattcaaacacaggtataaccaccgtcaacttggatatcacaaccgtt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttctacaacaggattcaaacacaggtataaccaccgtcaacttggatatcacaaccgtt 449
Query: 145 ggtgtaagaagcagcatcggaagccaagtataagtaagcaccgaccaattcttgtggcaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggtgtaagaagcagcatcggaagccaagtataagtaagcaccgaccaattcttgtggcaa 509
Query: 205 agcttcacgacccactggtgttagaccccaccagtgagcacgttgttcagtaggaacgaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agcttcacgacccactggtgttagaccccaccagtgagcacgttgttcagtaggaacgaa 569
Query: 265 ggaggatagcagagtatcagtgtaacctggtgatacagagttacatctgatcttaccagc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ggaggatagcagagtatcagtgtaacctggtgatacagagttacatctgatcttaccagc 629
Query: 325 tggagaggtcaaaccagagaattcgacggcgaaacccttggccatgtgtcttactgcagc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tggagaggtcaaaccagagaattcgacggcgaaacccttggccatgtgtcttactgcagc 689
Query: 385 tttagaagcgttgtaacaggtttggtagtttggaacgttactgatgtaactagacataga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tttagaagcgttgtaacaggtttggtagtttggaacgttactgatgtaactagacataga 749
Query: 445 agcagtcaagatcaaattaccgtggccttggttcttgaatacttcagcagcgtacctgct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 agcagtcaagatcaaattaccgtggccttggttcttgaatacttcagcagcgtacctgct 809
Query: 505 acagtggtaagtaccttggacgttaacgtccatgactctgcgccacatttctggggtgga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 acagtggtaagtaccttggacgttaacgtccatgactctgcgccacatttctggggtgga 869
Query: 565 accatcgttcaagatagaaccgttagtccaggcaatacctgcgttagcaatgaatgtgtt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 accatcgttcaagatagaaccgttagtccaggcaatacctgcgttagcaatgaatgtgtt 929
Query: 625 aattgcacgacctgngaaatctttc-agattctttc-aagacaaa-ttaacgtcgtcagc 681
|||||||||||||| |||||||| | |||||||||| |||||||| ||||||||||||||
Sbjct: 930 aattgcacgacctgggaaatcttccaagattctttcaaagacaaatttaacgtcgtcagc 989
Query: 682 gttgggtatatctacttggtatgacttggattcaat-ccgtaaatcttgctcaaatggac 740
||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 990 gttggtaatatctacttggtatgacttggattcaatcccgtaagtcttgctcaaatggac 1049
Query: 741 ggaaagttctggtgggaaggttctgtccaaaattatgacctttgaaacacaagaagcgaa 800
||||||||||||| ||||||||||||||||||| ||||| | |||| |||||||||||||
Sbjct: 1050 ggaaagttctggttggaaggttctgtccaaaataatgacatctgaaccacaagaagcgaa 1109
Query: 801 acccttcattagagcgccaccaatggccccagccaccaccagtaa 845
||||| |||||||||||||||||| |||| ||||||||||||
Sbjct: 1110 accctcacatagagcgccaccaatggcaccag-caccaccagtaa 1153
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4535
Number of Sequences: 1807
Number of extensions: 4535
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)