BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE05RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1683 1421 0.0
>3x_Contig1683
Length = 16378
Score = 1421 bits (717), Expect = 0.0
Identities = 798/816 (97%), Gaps = 7/816 (0%)
Strand = Plus / Minus
Query: 53 gggtggttcaataggcacaacgggcgacggacggtgcttactaaacggaaaaactgtttc 112
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5677 gggtggttcaataggcaaaacgggcgacggacggtgcttactaaacggaaaaactgtttc 5618
Query: 113 ggatccagtaatggcttgagcaatggacacgacaggcatcgggaacccttgaacagttcc 172
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5617 gggtccagtaatggcttgagccatggacacgacaggcatcgggaacccttgaacagttcc 5558
Query: 173 aggctgactgacgaagaatgataagatccaccatttgaacccgcgttgcaattgaatact 232
| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 5557 aagctgactgacgaagaatgataagatccaccatt-gaacccgcgt-gcaattgaatact 5500
Query: 233 ggggtttgaaccacggcttcgtaccaaacgtgttcgttcttctaaagtagcagactcatg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5499 ggggtttgaaccacggcttcgtaccaaacgtgttcgttcttctaaagtagcagactcatg 5440
Query: 293 gcctggagtcgctagctgattccggtgtaaaataccgtagtaatagtattgaccacatat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439 gcctggagtcgctagctgattccggtgtaaaataccgtagtaatagtattgaccacatat 5380
Query: 353 caacatgtcattagacaaataataaactgccaaaagaatctggaatgggagttgatgagt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5379 caacatgtcattagacaaataataaactgccaaaagaatctggaatgggagttgatgagt 5320
Query: 413 aagtacagctccaattaaactggttatatccccgaaaagccagcataatagaaatcctgg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5319 aagtacagctccaattaaactggttatatccccgaaaagccagcataatagaaatcctgg 5260
Query: 473 tgataacccttcaacactcttgtcacgataagtttctatcagttgtgggatttgagcgac 532
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5259 tgataacccttcaacactcttgtcacgataagtgtctatcagttgtgggatttgagcgac 5200
Query: 533 gaacgaagttaaaaacgaaatccctcctgaagcaacactaatttgaggccatagcgattt 592
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5199 gaacgaagtgaaaaacgaaatccctcctgaagcaacactaatttgaggccatagcgattt 5140
Query: 593 atcgcaccaggtcggatcactcatgttatcagttttcctgtattgtcacttaaaaaaggc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5139 atcgcaccaggtcggatcactcatgttatcagttttcctgtattgtcacttaaaaaaggc 5080
Query: 653 tgttcttaatgttacag-ccctttatcctcgaatattctaagtcttgtcttcttgttcct 711
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5079 tgttcttaatgttacagcccctttatcctcgaatattctaagtcttgtcttcttgttcct 5020
Query: 712 cttccttggtacatatcanaccatatatgtaaatttcaaattttttttgaagatcctttc 771
|||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||| |
Sbjct: 5019 cttccttgttacatatcaaaccatatatgtaaattccaaattttttttgaagatccttcc 4960
Query: 772 tttatctttctattcttcataacaattaaaactttcgagtcatatgcctttcttgggtag 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4959 tttatctttctattcttcataacaattaaaactttcgagtcatatgcctttctt-ggtag 4901
Query: 832 tgatgaagattaatagtgggtaataatagagggagc 867
||||| ||| ||||||| |||||| |||||||||||
Sbjct: 4900 tgatg-agaataatagt-ggtaat-atagagggagc 4868
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6011
Number of Sequences: 1807
Number of extensions: 6011
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)