BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE06FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig800 462 e-130
>3x_Contig800
Length = 3612
Score = 462 bits (233), Expect = e-130
Identities = 300/317 (94%), Gaps = 4/317 (1%)
Strand = Plus / Minus
Query: 445 cacacgcttgagccacacgatacgaaggagttgttgtcccattggtactggaccccgtat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3612 cacacgcttgagccacacgatacgaaggagttgttgtcccattggtactggaccccgtat 3553
Query: 505 tagatggcggatggcttgccgaaccagtttgatgcaacaacggtgttgtgatagacgata 564
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 3552 tagagggcggatggcttgccgaaccagtttgatgcaacaacggtgtagtgatagccgata 3493
Query: 565 aaagggacgcgtttacgggcgactctgaattcgacagtgtaggtgatgggccctgctgca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3492 aaagggacgcgtttacgggcgactctgaattcgacagtgtaggtgatgggccctgctgca 3433
Query: 625 attgttgtatcaatgtattattttctgctgctaaaaacactggatggattattatttgaa 684
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct: 3432 attgttgtatcgatgtatta-tttctgctgctaaaaacactggatggattatta-ttgga 3375
Query: 685 attgcttttactattgttattaaaacctgttggaattagacggtttccccgaaaccgctt 744
||||||||||||||||||||||| | ||||| || ||||||||| | || ||||||||
Sbjct: 3374 attgcttttactattgttattaata-ctgtttgagttagacggtataccagaaaccgc-a 3317
Query: 745 tgattaggtgactcctt 761
||| |||||||||||||
Sbjct: 3316 tgactaggtgactcctt 3300
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6884
Number of Sequences: 1807
Number of extensions: 6884
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)