BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE06RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 878 0.0
>3x_Contig1743
Length = 20172
Score = 878 bits (443), Expect = 0.0
Identities = 517/535 (96%), Gaps = 5/535 (0%)
Strand = Plus / Minus
Query: 48 ccttctttcca-cattaaatacctgtcttacagcgttgttatagcgatgcacttctttcc 106
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19737 ccttctttccaacattaaatacctgtcttacagcgttgttatagcgatgcacttctttcc 19678
Query: 107 cttctgcaacaaaggattggacagttttaatcccgcttagttgttcctctgcgactttgg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19677 cttctgcaacaaaggattggacagttttaatcccgcttagttgttcctctgcgactttgg 19618
Query: 167 taagattaccagaggcctgttgtaattctctagagattgctctaatcttgttaccgtaaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19617 taagattaccagaggcctgttgtaattctctagagattgctctaatcttgttaccgtaaa 19558
Query: 227 tggttgcgccaacaagtagcggtggagcaaataggaagagtacactagctaatgtactcg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19557 tggttgcgccaacaagtagcggtggagcaaataggaagagtacactagctaatgtactcg 19498
Query: 287 atatatggaacatcatgccaataccaacaccaccgcaaatcaaagctttgaaaccatctg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19497 atatatggaacatcatgccaataccaacaccaccgcaaatcaaagctttgaaaccatctg 19438
Query: 347 aaatattttgagtcatagatctagacactatgtacgcatctgcacctaatctggataac- 405
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19437 aaatattttgagtcatagatctagacactatgtacgcatctgcacctaatctggataaca 19378
Query: 406 agtcaccaaccttgtttctgtcataaaattccatatcatgatgcatagtcttcttgataa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19377 agtcaccaaccttgtttctgtcataaaattccatatcatgatgcatagtcttcttgataa 19318
Query: 466 cgtttgatcttaatttggccccaagttttttcccttattttctaaggagtacttcttttt 525
|||||||||||||| ||||| ||||| ||| |||| || | ||||||||||| | | ||
Sbjct: 19317 cgtttgatcttaatctggccacaagtctttcccctaatatcttaaggagtactac-tctt 19259
Query: 526 ccaaaattagccctgggttcctatcaacaaggccccccccgaataaaagggaaaa 580
|||||||||||| | ||||||||||||||||| |||| |||||||||||| ||||
Sbjct: 19258 ccaaaattagccat-ggttcctatcaacaagg-ccccaccgaataaaaggaaaaa 19206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7073
Number of Sequences: 1807
Number of extensions: 7073
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)