BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE07FM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig484 906 0.0
>3x_Contig484
Length = 1849
Score = 906 bits (457), Expect = 0.0
Identities = 516/532 (96%), Gaps = 3/532 (0%)
Strand = Plus / Minus
Query: 75 tgatggaagtctcgtatataatttgatgaccgcttcttttat-acaatcgcttcatctct 133
|||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct: 1849 tgatggaagtctcgtatataatntgatgacgctttcttttatcacaatcgcttcatctct 1790
Query: 134 tgtaactgttgtcgacaatctttagcattttccagttccattgttgaaaaat-aataatt 192
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1789 tgtaactgttgtcgacaatctttagcattttccagttccattgttgaaaaatcaataatc 1730
Query: 193 agtttatacataatccttctggaaacaaaagaaagcaaccaacaaggtttgattgcgtga 252
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 agtatgaacataatccttctggaaacaaaagaaagcaaccaacaaggtttgattgcgtga 1670
Query: 253 ctgccaacacggcttgggttccttccaggcagttcaatcagttggatggtatcatactgc 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 ctgccaacacggcttgggttccttccaggcagttcaatcagttggatggtatcatactgc 1610
Query: 313 gaaaatattataactggaacttgtggatgattgaatctgagggtttacatgtatgcattt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 gaaaatattataactggaacttgtggatgattgaatctgagggtttacatgtatgcattt 1550
Query: 373 ttatcttatactatgtgacagctgaggtgaaaccttatttactaacttatattaataaac 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 ttatcttatactatgtgacagctgaggtgaaaccttatttactaacttatattaataaac 1490
Query: 433 gtgatgcatgcaacctggcgagtaggcttggtgatcctgtattgggaattctgtgctatt 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 gtgatgcatgcaacctggcgagtaggcttggtgatcctgtattgggaattctgtgctatt 1430
Query: 493 atcatcaatctacaaaagagtacggcatttaaaatccgtttctgttgcaaacttgtcttt 552
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 atcatcaatttagaaaagagtacggcatttaaaatccgtttctgttgcaaacttgtcttt 1370
Query: 553 atcgaatcgt-aatatgccgaagtgtgctttaagatcttcccctgctttgtt 603
|||||||||| || |||| ||||||||||||| |||||||||||||||||||
Sbjct: 1369 atcgaatcgtaaagatgcggaagtgtgctttaggatcttcccctgctttgtt 1318
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6461
Number of Sequences: 1807
Number of extensions: 6461
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)