BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE08FM1.SCF screened BAC_end
(862 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 779 0.0
>3x_Contig1807
Length = 66587
Score = 779 bits (393), Expect = 0.0
Identities = 556/597 (93%), Gaps = 10/597 (1%)
Strand = Plus / Plus
Query: 86 ccaatccaagaaaaacggctatgtatttacccttgattcgccgtgcggcacaaatggata 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25868 ccaatccaagaaaaacggctatgtatttacccttgattcgccgtgcggcacaaatggata 25927
Query: 146 ccgcacgtggtcctgcaggtgtttctttgggttagccactgcttggttagctgcttctgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25928 ccgcacgtggtcctgcaggtgtttctttgggttagccactgcttggttagctgcttctgt 25987
Query: 206 tgcattgtgcattttttcggttggtgcattatgcataacgtcatttgttttcgcatcagt 265
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25988 tgcattgtgcagtctttcggttggtgcattatgcataacgtcatttgttttcgcatcagt 26047
Query: 266 tctttcagcggctaacattgccggttatagaggtggaacaggtggttctgtgagtgagcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26048 tctttcagcggctaacattgccggttatagaggtggaacaggtggttctgtgagtgagcg 26107
Query: 326 cggttactttgagtttgcaac-acgccaataggaacttta-aaagtaatagcactgacct 383
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 26108 cggttactttgagtttgcaacaacgccaataggaactttacaaagtaatagcactgacct 26167
Query: 384 gaactctgtagaaagcgcttttgaagggcatgtcaacgattttaactttgatcggggaac 443
||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||
Sbjct: 26168 gaactctgtagaaagcgcttttgaagggcatgtcaacga-tttaaccttgatc-gggaac 26225
Query: 444 tatgattttaacttcatacgtaatgggagtctttttaaccgcgaatggccaattagcaga 503
|||||||||||||||||||||||||| ||||||||||| ||||| | || ||| ||||||
Sbjct: 26226 tatgattttaacttcatacgtaatggaagtctttttaaacgcgagttgcaaatcagcaga 26285
Query: 504 accctatttcattttgcttc-aagtaatggtgaacatattgccatttccaatttcggaat 562
|| || ||||||||||||| |||| ||||||||||||| |||||| || || | |||
Sbjct: 26286 cccgtaattcattttgcttcgaagt-atggtgaacatatagccattcacacttcggaaat 26344
Query: 563 tttttatggagaactttggttcaaattattgttaccgttacccca-aacatccacagggt 621
|| | ||| || ||||||| ||||||||||| || || ||||||| | ||||||||||||
Sbjct: 26345 ttctcatgaag-actttgg-tcaaattattgctaacgctaccccagaccatccacagggt 26402
Query: 622 ggaaaattggggaaaaaaggttgggcatttgaagc-acttgggggtcttaaaattat 677
|||||||||||||||| ||||||| ||||||| || ||||||| |||||| ||||||
Sbjct: 26403 ggaaaattggggaaaagaggttggtcatttgatgcaacttgggtgtcttataattat 26459
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5832
Number of Sequences: 1807
Number of extensions: 5832
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 862
length of database: 10,358,551
effective HSP length: 16
effective length of query: 846
effective length of database: 10,329,639
effective search space: 8738874594
effective search space used: 8738874594
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)