BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZE09FM1.SCF screened BAC_end (900 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig187 928 0.0 3x_Contig1254 188 1e-47 >3x_Contig187 Length = 1332 Score = 928 bits (468), Expect = 0.0 Identities = 496/504 (98%), Gaps = 1/504 (0%) Strand = Plus / Plus Query: 85 ctttatcataaatgacccatcaacacctttatccgccccgactaatagaatattggagcg 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 589 ctttatcataaatgacccatcaacacctttatccgccccgactaatagaatattggagcg 648 Query: 145 agtattcttcgagaggaagtcacttatttcccagggttgttctttcatgattgtcaagat 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 agtattcttcgagaggaagtcacttatttcccagggttgttctttcatgattgtcaagat 708 Query: 205 catttgtgattttctatctttcgcatctccgacaagtaaaccctccttaaactcagtaaa 264 |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 709 catttgtgataatccatctttcgcatctccgacaagtaaaccctccttaaactcagtaaa 768 Query: 265 tcgttcggatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattttcca 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 769 tcgttcggatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattttcca 828 Query: 325 ctcttcgactgttcgtgtactttccattgaatacatctggagttccattaaacgtgcggc 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 829 ctcttcgactgttcgtgtactttccattgaatacatctggagttccattaaacgtgcggc 888 Query: 385 aaaagagagcctatcattctctaaaaacattgggccaaaagcacaaaacattaagcggat 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 889 aaaagagagcctatcattctctaaaaacattgggccaaaagcacaaaacattaagcggat 948 Query: 445 tagtacagacaaaattttattcggtttattgggcttgctgttaacaagttcgtctg-att 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 949 tagtacagacaaaattttattcggtttattgggcttgctgttaacaagttcgtctgaatt 1008 Query: 504 ttcaagtacgtaccgaaatactgtcaaaaactcattcacttcaacatcattaaaccaatg 563 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1009 ttcaagtacgtaccgaaatactgtcaaaaactcattcacttcaacatcataaaaccaatt 1068 Query: 564 ctttttgatacgcacccattctaa 587 |||||| |||| |||||||||||| Sbjct: 1069 cttttttatactcacccattctaa 1092 >3x_Contig1254 Length = 5494 Score = 188 bits (95), Expect = 1e-47 Identities = 179/199 (89%), Gaps = 6/199 (3%) Strand = Plus / Plus Query: 645 tgattcctgttccaggtacaagtgacttggatcttcgatatcttcggtagacatggtccc 704 |||||||||||| || ||||||||||| | ||||||||||||| |||||||||| ||||| Sbjct: 12 tgattcctgttcaag-tacaagtgact-gtatcttcgatatct-cggtagacattgtccc 68 Query: 705 caacttctacttttaggttctccaacgtttttagcaattcttcattttcgagaattttac 764 | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct: 69 -agcttctacttttaggttctccagcgtttttagcaattcttcattttcgagaatattac 127 Query: 765 ttttaaaaggatttagaagccccaatagtctggttcctagtt-ccttaatttaagctggc 823 ||| | ||| |||||||||||||||||||||| ||||||||| ||| ||| ||||||| | Sbjct: 128 tttcagaagaatttagaagccccaatagtctgtttcctagttccctcaatctaagctgac 187 Query: 824 agggttgagtccttttcaa 842 | |||||||||||| |||| Sbjct: 188 a-ggttgagtccttctcaa 205 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,010 Number of Sequences: 1807 Number of extensions: 13010 Number of successful extensions: 184 Number of sequences better than 1.0e-20: 2 length of query: 900 length of database: 10,358,551 effective HSP length: 16 effective length of query: 884 effective length of database: 10,329,639 effective search space: 9131400876 effective search space used: 9131400876 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)