BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE09RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 975 0.0
>3x_Contig1801
Length = 57606
Score = 975 bits (492), Expect = 0.0
Identities = 600/624 (96%), Gaps = 9/624 (1%)
Strand = Plus / Minus
Query: 41 cattaggtgtggatcacagtatcgagaataatttacaaacagagactaatagattgtcca 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41524 cattaggtgtggatcacagtatcgagaataatttacaaacagagactaatagattgtcca 41465
Query: 101 agactttgactaagttttgggaacaagtgagtttagaagaaacccccgaaaatgttacca 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41464 agactttgactaagttttgggaacaagtgagtttagaagaaacccccgaaaatgttacca 41405
Query: 161 ttaaattggattctaagcctttgcgtactcctttggggaaccctttaactttaccacaat 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41404 ttaaattggattctaagcctttgcgtactcctttggggaaccctttaactttaccacaat 41345
Query: 221 ctcgtaagcttttatcggttatggttctcaatgaatggagtaatcttcctagtttatctg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41344 ctcgtaagcttttatcggttatggttctcaatgaatggagtaatcttcctagtttatctg 41285
Query: 281 tcaagccttatgttttacctttaacctctttagtttcccgttgcattgatttggaaaagg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41284 tcaagccttatgttttacctttaacctctttagtttcccgttgcattgatttggaaaagg 41225
Query: 341 ccaatgaggacggtgtagacccagaacttgttgcgaagataggtgggaacagagaaaagt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41224 ccaatgaggacggtgtagacccagaacttgttgcgaagataggtgggaacagagaaaagt 41165
Query: 401 taactgaaggtcttttgagatatttagatactgatactctattagtgttttctccagcaa 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41164 taactgaaggtcttttgagatatttagatactgatactctattagtgttttctccagcaa 41105
Query: 461 atgaatacgaaagtgcgcttagaaaggctcaagatgaattgtatctaccgataatttccg 520
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 41104 atgaatacgaaggtgcgctaagaaaggctcaagatgaattgtatctaccgataatttccg 41045
Query: 521 gtgtcgaaaagttccttttctcaattaatttaagatagaaaggaattcaaatttccaatt 580
||||||||||||||| | |||||| ||| | |||||| || ||| ||||| || ||| |
Sbjct: 41044 gtgtcgaaaagttcc-tatctcaaataaataaagataagaaagaagtcaaa-ttacaaat 40987
Query: 581 tttggacgctgattttacattggattgagaaggtaaccccccaaagtggagaagaccaga 640
||||||||||| |||||| ||||||||| |||||| | |||||||||||| |||||||
Sbjct: 40986 attggacgctga-tttaca-tggattgag-aggtaa-cgcccaaagtggag-agaccag- 40933
Query: 641 agaagtagcttaaaccgtatttgg 664
||||||||| ||||| ||||||||
Sbjct: 40932 agaagtagc-taaacagtatttgg 40910
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8067
Number of Sequences: 1807
Number of extensions: 8067
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)