BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZE10FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 781 0.0
>3x_Contig1786
Length = 33838
Score = 781 bits (394), Expect = 0.0
Identities = 409/414 (98%)
Strand = Plus / Plus
Query: 70 aatacctggcaaatatttgacgttttcgtgacgagtgttgatgatttcagtcaacttttc 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23609 aatacctggcaaatatttgacgttttcgtgacgagtgttgatgatttcagtcaacttttc 23668
Query: 130 accgttaatgttttcttcgaaaacccacatatcaactctgttgacaaataggttaggtct 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23669 accgttaatgttttcttcgaaaacccacatatcaactctgttgacaaataggttaggtct 23728
Query: 190 caaagcacagttttcagcaacaaccttggcgatagtagtaccccagttaccagaaccgac 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23729 caaagcacagttttcagcaacaaccttggcgatagtagtaccccagttaccagaaccgac 23788
Query: 250 aactgtaaccttgaaaggtgcatcggcttgaggttcaacggacttagaaagaatcgagga 309
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 23789 aactgtaaccttgaaaggtgcatcggcttgaggttccacggacttagaaagaatcgagga 23848
Query: 310 agtttgctttaatctatcggaagctggactcatgttggaaatcgtgtttgtgtttgtaat 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23849 agtttgctttaatctatcggaagctggactcatgttggaaatcgtgtttgtgtttgtaat 23908
Query: 370 ttttattgtattagcagtagaacttttaatataatgtttgaatatacctctgagcttgct 429
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 23909 ttttattgtattagcagtagaacttttagtataatgtttgaatatacctctgagcttgct 23968
Query: 430 tgatatgttttgatgtatcaaattataacccaaacttttaccaattacacaact 483
|||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct: 23969 tgatatgttttgatgtatcaaattataaccaaaacttctaccaataacacaact 24022
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,130
Number of Sequences: 1807
Number of extensions: 14130
Number of successful extensions: 189
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)