BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZE10RM1.SCF screened BAC_end (962 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1740 660 0.0 >3x_Contig1740 Length = 21823 Score = 660 bits (333), Expect = 0.0 Identities = 360/365 (98%), Gaps = 3/365 (0%) Strand = Plus / Plus Query: 48 tcgtcgttaaagttttggaagaaaaatgggctcgaggacgattccgatactggcatcgtt 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2550 tcgtcgttaaagttttggaagaaaaatgggctcgaggacgattccgatactggcatcgtt 2609 Query: 108 agtggtagtggatttggtaagaacagtggtggtgatgatgatgctaacgtggaaactatt 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2610 agtggtagtggatttggtaagaacagtggtggtgatgatgatgctaacgtggaaactatt 2669 Query: 168 gaattaggtgagtatccaaacacgaagaaaagtagcaagaggagtaaatttggattcgat 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2670 gaattaggtgagtatccaaacacgaagaaaagtagcaagaggagtaaatttggattcgat 2729 Query: 228 ttcgataagagatcgtcagtgtcaagtgaaagaaccattttcaattctcagggatgtctt 287 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 2730 ttcgataagagatcgtcagtgtcaagtgaaagaaccattttcaattctca-ggatgtctt 2788 Query: 288 ccttgctaagttgaccgatgaaaaacgtaagatcgatgatttctacaagagacttgaggc 347 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 2789 ccttgctaagttgaccgatgaaaaacgtaagaccgatgatttctacaagagacttgaggc 2848 Query: 348 aaaactttattccaagttcgaaactttgaccaaagacctttgaaaatgctgggttttgca 407 |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct: 2849 aaaactttattccaagttcgaaactttgacaaaagacc-ttgaaaatgct-ggttttgca 2906 Query: 408 aattt 412 ||||| Sbjct: 2907 aattt 2911 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 46,059 Number of Sequences: 1807 Number of extensions: 46059 Number of successful extensions: 7153 Number of sequences better than 1.0e-20: 1 length of query: 962 length of database: 10,358,551 effective HSP length: 16 effective length of query: 946 effective length of database: 10,329,639 effective search space: 9771838494 effective search space used: 9771838494 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)