BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZE11FM1.SCF screened BAC_end (896 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1338 952 0.0 >3x_Contig1338 Length = 8134 Score = 952 bits (480), Expect = 0.0 Identities = 565/587 (96%), Gaps = 5/587 (0%) Strand = Plus / Minus Query: 85 catatcgaagacatcacaattaattcagtagacgttcacataaggtaacaattccacaga 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6123 catatcgaagacatcacaattaattcagtagacgttcacataaggtaacaattccacaga 6064 Query: 145 taccagaaacattggacctttcatttccctggttacaaaatttctttgaacggaagaatt 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6063 taccagaaacattggacctttcatttccctggttacaaaatttctttgaacggaagaatt 6004 Query: 205 acacagccctattttagacgaacttctcgacaaaacggctggatcttggttctaacattt 264 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6003 acacagccctaccagagacgaacttctcgacaaaacggctggatcttggttctaacattt 5944 Query: 265 tctttggcgactgcaatttaatgaatcagcgtgtcttccaaaagacataatgactcccga 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5943 tctttggcgactgcaatttaatgaatcagcgtgtcttccaaaagacataatgactcccga 5884 Query: 325 cagattgagacgtgcagaattctgtcagcgtctttgaaaaaatacctgaacgattagtaa 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5883 cagattgagacgtgcagaattctgtcagcgtctttgaaaaaatacctgaacgattagtaa 5824 Query: 385 gaatagatctatgtttttgcagttgtggaccctattgaatttagtacagtcctgattaag 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5823 gaatagatctatgtttttgcagttgtggaccctattgaatttagtacagtcctgattaag 5764 Query: 445 ccagggtccttctagggaaaatgtaatcttttggtttaattaggtagcagggagattgtt 504 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 5763 ccagggtccttctagggaaaatgtaatctttcggtttaattaggtagcagggagattgtt 5704 Query: 505 tgtagccattccggtttgtttaacagc-tttagattagacgatgcttttactgatttggg 563 |||||||||||||||| || |||||| || ||||||||||||||||| ||||||||| | Sbjct: 5703 tgtagccattccggttgtttaaacagcattaagattagacgatgctttaactgatttgtg 5644 Query: 564 ttctttcgtctc-atttatgaatttcttgac-atttgacaaa-tcagagcttttttgtc- 619 |||||||||||| |||||||| ||||||||| |||||||||| ||||||||| |||||| Sbjct: 5643 ttctttcgtctcaatttatgagtttcttgacgatttgacaaagtcagagcttctttgtct 5584 Query: 620 ttaattttacgcgnagttctacacagattgcttggttgtgaggatct 666 |||||| |||||| ||| |||||||||||||||||||||||||||| Sbjct: 5583 ttaattctacgcggagtcgtacacagattgcttggttgtgaggatct 5537 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6975 Number of Sequences: 1807 Number of extensions: 6975 Number of successful extensions: 36 Number of sequences better than 1.0e-20: 1 length of query: 896 length of database: 10,358,551 effective HSP length: 16 effective length of query: 880 effective length of database: 10,329,639 effective search space: 9090082320 effective search space used: 9090082320 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)