BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZE11FM1.SCF screened BAC_end
         (896 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1338                                                         952   0.0  

>3x_Contig1338 
          Length = 8134

 Score =  952 bits (480), Expect = 0.0
 Identities = 565/587 (96%), Gaps = 5/587 (0%)
 Strand = Plus / Minus

                                                                        
Query: 85   catatcgaagacatcacaattaattcagtagacgttcacataaggtaacaattccacaga 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6123 catatcgaagacatcacaattaattcagtagacgttcacataaggtaacaattccacaga 6064

                                                                        
Query: 145  taccagaaacattggacctttcatttccctggttacaaaatttctttgaacggaagaatt 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6063 taccagaaacattggacctttcatttccctggttacaaaatttctttgaacggaagaatt 6004

                                                                        
Query: 205  acacagccctattttagacgaacttctcgacaaaacggctggatcttggttctaacattt 264
            |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6003 acacagccctaccagagacgaacttctcgacaaaacggctggatcttggttctaacattt 5944

                                                                        
Query: 265  tctttggcgactgcaatttaatgaatcagcgtgtcttccaaaagacataatgactcccga 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5943 tctttggcgactgcaatttaatgaatcagcgtgtcttccaaaagacataatgactcccga 5884

                                                                        
Query: 325  cagattgagacgtgcagaattctgtcagcgtctttgaaaaaatacctgaacgattagtaa 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5883 cagattgagacgtgcagaattctgtcagcgtctttgaaaaaatacctgaacgattagtaa 5824

                                                                        
Query: 385  gaatagatctatgtttttgcagttgtggaccctattgaatttagtacagtcctgattaag 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5823 gaatagatctatgtttttgcagttgtggaccctattgaatttagtacagtcctgattaag 5764

                                                                        
Query: 445  ccagggtccttctagggaaaatgtaatcttttggtttaattaggtagcagggagattgtt 504
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5763 ccagggtccttctagggaaaatgtaatctttcggtttaattaggtagcagggagattgtt 5704

                                                                        
Query: 505  tgtagccattccggtttgtttaacagc-tttagattagacgatgcttttactgatttggg 563
            ||||||||||||||||  || |||||| || ||||||||||||||||| ||||||||| |
Sbjct: 5703 tgtagccattccggttgtttaaacagcattaagattagacgatgctttaactgatttgtg 5644

                                                                        
Query: 564  ttctttcgtctc-atttatgaatttcttgac-atttgacaaa-tcagagcttttttgtc- 619
            |||||||||||| |||||||| ||||||||| |||||||||| ||||||||| |||||| 
Sbjct: 5643 ttctttcgtctcaatttatgagtttcttgacgatttgacaaagtcagagcttctttgtct 5584

                                                           
Query: 620  ttaattttacgcgnagttctacacagattgcttggttgtgaggatct 666
            |||||| |||||| |||  ||||||||||||||||||||||||||||
Sbjct: 5583 ttaattctacgcggagtcgtacacagattgcttggttgtgaggatct 5537


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6975
Number of Sequences: 1807
Number of extensions: 6975
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)