BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZE11RM1.SCF screened BAC_end
         (912 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1762                                                        1291   0.0  

>3x_Contig1762 
          Length = 22098

 Score = 1291 bits (651), Expect = 0.0
 Identities = 720/733 (98%), Gaps = 8/733 (1%)
 Strand = Plus / Plus

                                                                         
Query: 45    gcttataactcca-ggtctaacccatgtcggtaggttcaaagagttgacttggccccaaa 103
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12566 gcttataactccaaggtctaacccatgtcggtaggttcaaagagttgacttggccccaaa 12625

                                                                         
Query: 104   gacgcgaaatggcgtttaatggcaacgtactgtaacagaaaaacagccagttattattga 163
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12626 gacgcgaaatggcgtttaatggcaacgtactgtaacagaaaaacagccagttattattga 12685

                                                                         
Query: 164   atattttaatacgatacttccccttcactttatcctgcgaatctccttccaccacatcgc 223
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12686 atattttaatacgatacttccccttcactttatcctgcgaatctccttccaccacatcgc 12745

                                                                         
Query: 224   cagattccgctacttttatcctttggtaatgctgatttatcaagtacgaactaatgatta 283
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12746 cagattccgctacttttatcctttggtaatgctgatttatcaagtacgaactaatgatta 12805

                                                                         
Query: 284   acgtaaaactagtcgcgacaacccacttcaccatgcgttttttcgaattctccggtctca 343
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12806 acgtaaaactagtcgcgacaacccacttcaccatgcgttttttcgaattctccggtctca 12865

                                                                         
Query: 344   caatgggacccgatgacataaacctctggctaagcaacatcttcgtcttatttttcaaat 403
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12866 caatgggacccgatgacataaacctctggctaagcaacatcttcgtcttatttttcaaat 12925

                                                                         
Query: 404   aaggacctgacacacgttgtggaacctgtggccacggaatccgcgacattgtcaacgata 463
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12926 aaggacctgacacacgttgtggaacctgtggccacggaatccgcgacattgtcaacgata 12985

                                                                         
Query: 464   cgttcctagatattccaatcattgcgagtatctaaccaccgacacaaaaattcaaaaaga 523
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12986 cgttcctagatattccaatcattgcgagtatctaaccaccgacacaaaaattcaaaaaga 13045

                                                                         
Query: 524   aaacagtcaaataattaccttttaccttgtaatcaccaaaaaacacaacacannacacaa 583
             ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 13046 aaacagtcaaataattaccttttaccttgtaatcaccaaaaaacacaacacaaaacacaa 13105

                                                                         
Query: 584   aacactaaccaacagcccttaggaaaacccactactaatacactgcaaactcttttctat 643
             ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13106 aacactaaccaacag-ccttaggaaaaccaactactaatacactgcaaactcttttctat 13164

                                                                         
Query: 644   cttctagtaccacgctaaagacaattnttggcgcgctgctccaaattatctctctagaaa 703
             |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 13165 cttctagtaccacgctaaggacaatt-ttggcgcgctgctccaaattatctctctagaaa 13223

                                                                         
Query: 704   attcatgtgcccgatcttaaatacatttctctatacagggaaaaccttcttattctaaag 763
             || |||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct: 13224 atccatgtg-ccgatcttaaataca-ttctctataca-ggaaaacc-tcttattctaaag 13279

                          
Query: 764   actttttttatat 776
              ||||||||||||
Sbjct: 13280 -ctttttttatat 13291


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6483
Number of Sequences: 1807
Number of extensions: 6483
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)