BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZE12FM1.SCF screened BAC_end
         (1130 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1567                                                         234   3e-61

>3x_Contig1567 
          Length = 11673

 Score =  234 bits (118), Expect = 3e-61
 Identities = 176/190 (92%), Gaps = 4/190 (2%)
 Strand = Plus / Minus

                                                                        
Query: 101  gcaagcttaaataacctagatttgggtacagacatgttctcaaaatatgaaaatatgagt 160
            |||||||| | || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7730 gcaagcttcagtagcctagatttgggtacagacat-ttctcaaaatatgaaaatatgagt 7672

                                                                        
Query: 161  gataactgatggaacaacccgcaaactagttctttgagagttaaagcacacctaagacct 220
            ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 7671 gataactgatggaacaacccgcaaactagttcgctgagagttaaagcacacctaagacct 7612

                                                                        
Query: 221  atttattggtactttcactgagctacgtttgcagcagggtttctattttatggcaagctt 280
            ||||||||||||||||||| | |||| | ||||||| |||||||||||||| ||||||| 
Sbjct: 7611 atttattggtactttcactta-ctacttctgcagca-ggtttctattttat-gcaagctc 7555

                      
Query: 281  agattttttt 290
            || |||||||
Sbjct: 7554 agtttttttt 7545


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9227
Number of Sequences: 1807
Number of extensions: 9227
Number of successful extensions: 101
Number of sequences better than 1.0e-20: 1
length of query: 1130
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1114
effective length of database: 10,329,639
effective search space: 11507217846
effective search space used: 11507217846
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)