BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZE12RM1.SCF screened BAC_end (942 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig374 1059 0.0 >3x_Contig374 Length = 1960 Score = 1059 bits (534), Expect = 0.0 Identities = 639/662 (96%), Gaps = 9/662 (1%) Strand = Plus / Minus Query: 42 gcttcccctccctcttaattgcc-tgatc-tttgctccatggttcggttcttcaccacat 99 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 760 gcttcccctccctcttaattgccatgatcatttgctccatggttcggttcttcaccacat 701 Query: 100 atttcattgctgtgacaagacctacttttgggattccagatgtataatcacatccactta 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 700 atttcattgctgtgacaagacctacttttgggattccagatgtataatcacatccactta 641 Query: 160 gacataccaaggatctcaattgatcttcggtcaatttgcttaatgggaatttgctctcat 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 640 gacataccaaggatctcaattgatcttcggtcaatttgcttaatgggaatttgccctcat 581 Query: 220 tcaacctctcaaagttacgtctatcaatctctatgcactcagcattatcatttaacttcg 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 tcaacctctcaaagttacgtctatcaatctctatgcactcagcattatcatttaacttcg 521 Query: 280 taattaatcttgtgcatccaaaaactaataaatcagagtcctccgaaatgatcccctgga 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 taattaatcttgtgcatccaaaaactaataaatcagagtcctccgaaatgatcccctgga 461 Query: 340 ctaacccctgtttttccaaatacaccatctgggcatctgcttcataaggtgcaacgacat 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 ctaacccctgtttttccaaatacaccatctgggcatctgcttcataaggtgcaacgacat 401 Query: 400 acggtatcgaattcatttgcagatactcaatgacacatttagccatatccggggtgatgc 459 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 400 acggtatcgaattcatttgcagatactcaatgacacatttagccatatccggggtgatg- 342 Query: 460 taacgcatttttggaaataatcgtaagccaacctcctatctccagcttcgaacaatgcat 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 341 taacgcatttttggaaataatcgtaagccaacctcctatctccagcttcgaacaatgcat 282 Query: 520 gtgctttctccctattctcttttcgtttctctgcccttttcagctcagtctttttcttta 579 |||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| | Sbjct: 281 gtgctttctccctattctctttccgtttctctgccctcttcagctcagtctctttcttca 222 Query: 580 cttgaattgaat-acccttgaattcaaagaatgggagtattcttgaaatgccttaacatt 638 ||||||| |||| ||| | |||| |||||||| |||||| |||||||||||||||||| | Sbjct: 221 cttgaatagaatcaccatcgaatacaaagaat-ggagtaatcttgaaatgccttaaca-t 164 Query: 639 taaaatttttttgatgaaaaaattgtaaatattttgtcagtaggcctgggccatggcaag 698 | ||||| | |||||| |||||||||||||| |||||||||||| |||| |||||||||| Sbjct: 163 tgaaattctcttgatg-aaaaattgtaaata-tttgtcagtagg-ctggtccatggcaag 107 Query: 699 tt 700 || Sbjct: 106 tt 105 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7280 Number of Sequences: 1807 Number of extensions: 7280 Number of successful extensions: 51 Number of sequences better than 1.0e-20: 1 length of query: 942 length of database: 10,358,551 effective HSP length: 16 effective length of query: 926 effective length of database: 10,329,639 effective search space: 9565245714 effective search space used: 9565245714 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)