BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF01FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1521 1168 0.0
>3x_Contig1521
Length = 8057
Score = 1168 bits (589), Expect = 0.0
Identities = 630/641 (98%), Gaps = 2/641 (0%)
Strand = Plus / Plus
Query: 76 acaatgatgatataactcaaaagttgatattgctgacaggtaagccgaaaaaggaaatga 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1913 acaatgatgatataactcaaaagttgatattgctgacaggtaagccgaaaaaggaaatga 1972
Query: 136 gggttatcttcgaggaagagcttactaaattcaaaccgttgagtactaggattgaagcaa 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973 gggttatcttcgaggaagagcttactaaattcaaaccgttgagtactaggattgaagcaa 2032
Query: 196 caatattcaaactatacaatttgattaacgacataaaaatcaagttggacgaagttttca 255
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2033 caatattcaaacaaaacaatttgattaacgacataaaaatcaagttggacgaagttttca 2092
Query: 256 aacttattggagtacaagataagacccctgaacaagaaaatacagtgaaagaaagacaga 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2093 aacttattggagtacaagataagacccctgaacaagaaaatacagtgaaagaaagacaga 2152
Query: 316 cctttttcgataaggttgaaaaggcttttaaccaattcgttatatttagtaccgatttgc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2153 cctttttcgataaggttgaaaaggcttttaaccaattcgttatatttagtaccgatttgc 2212
Query: 376 cgaagggtttaaacttttacgacactttgctcaagatgactagagaattaagccacgcat 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2213 cgaagggtttaaacttttacgacactttgctcaagatgactagagaattaagccacgcat 2272
Query: 436 ccacccctggacaatctgtaaacttgatagattccaacacattgccacctaacttaccac 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2273 ccacccctggacaatctgtaaacttgatagattccaacacattgccacctaacttaccac 2332
Query: 496 aaaaatctacacaatctacaacacttacaaagagtttcgcaaatttaaacttatgcaatg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 aaaaatctacacaatctacaacacttacaaagagtttcgcaaatttaaacttatgcaatg 2392
Query: 556 atgttaatgactcggtaactcaaagtcctgcaaatctcgctaacactaataacaccggag 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2393 atgttaatgactcggtaactcaaagtcctgcaaatctcgctaacactaataacaccggag 2452
Query: 616 tgaatccaggttcgcctcatttaccaccgaaacctttttctacccgtatcaatggggctt 675
||||||||||| ||||||| ||||||||||||||| |||||||| |||||| | ||||||
Sbjct: 2453 tgaatccaggtccgcctcaattaccaccgaaacctctttctaccggtatcagt-gggctt 2511
Query: 676 gtcagcgatcaaaagctgccagaagggaccgacattctttt 716
|||||||||||||||||| ||||| |||||||||| |||||
Sbjct: 2512 gtcagcgatcaaaagctg-cagaatggaccgacatcctttt 2551
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7866
Number of Sequences: 1807
Number of extensions: 7866
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)