BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF01RM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1331 1407 0.0
>3x_Contig1331
Length = 5830
Score = 1407 bits (710), Expect = 0.0
Identities = 813/838 (97%), Gaps = 7/838 (0%)
Strand = Plus / Minus
Query: 43 gcttcgtctac-tcttca-tttcc-cagtgtcactgagccttagttttgccaaggcctgt 99
||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1884 gcttcgtctacatcttcaatttccacagtgtcactgagccttagttttgccaaggcctgt 1825
Query: 100 gatagtctgataattgcaagtaaagttctaggtgttgcttgcccaaacgagaatttagaa 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 gatagtctgataattgcaagtaaagttctaggtgttgcttgcccaaacgagaatttagaa 1765
Query: 160 tccaacgctttcttagagtcttgtctcattcttgtataagatagaactatgtgttcattg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 tccaacgctttcttagagtcttgtctcattcttgtataagatagaactatgtgttcattg 1705
Query: 220 acatcagctgacaacacaggtctcttagtcttggcgtatgcaatatactctctcatttcg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1704 acatcagctgacaacacaggtctcttagtcttggcgtatgcaatatactctctcatttcg 1645
Query: 280 ctcgaaggaattggttcgaaaccaaaatcaggttgcctgtcatacatatgaacgtacgtg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1644 ctcgaaggaattggttcgaaaccaaaatcaggttgcctgtcatacatatgaacgtacgtg 1585
Query: 340 acgtgttctgctaacttctcatcgttttctttgcttggcatatcgagtagtaaaaacatg 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 acgtgttctgctaacttctcatcgttttctttgcttggcatatcgagtagtaaaaacatg 1525
Query: 400 atatcgaatctagacaaaagagctgctggtagattaatattttcaagtggagataacctt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 atatcgaatctagacaaaagagctgctggtagattaatattttcaagtggagataacctt 1465
Query: 460 ggattataccttccgtatagcgggttagcagctgccaatatggaggctctggcatttaaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 ggattataccttccgtatagcgggttagcagctgccaatatggaggctctggcatttaaa 1405
Query: 520 gtagtgttaatacctgccttagaaattgaaatggtttgttgttccataacttcatggata 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 gtagtgttaatacctgccttagaaattgaaatggtttgttgttccataacttcatggata 1345
Query: 580 gcagttctatcacttttatccatcttatcaaattcatcgatacaacagataccgttattc 639
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 gcagttctatcactttcatccatcttatcaaattcatcgatacaacagataccgttatcg 1285
Query: 640 gcaaggacgagggcaccaccttctagcaccatttcatcagtcactggatccttcataacg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 gcaaggacgagggcaccaccttctagcaccatttcatcagtcactggatccttcataacg 1225
Query: 700 gcggctgttagacctac-ccagaagaacccttacca-ttgtatagacacctcttcgagaa 757
||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct: 1224 gcggctgttagacctacaccagaagaacccttaccagttgtatagacacctctcggagaa 1165
Query: 758 aatttacagatagtattcaattattgtagatttagcaacaccaggatccaccatc-agca 816
| ||||||||||| |||||| |||| ||||||||||||||||||||| ||||| ||||
Sbjct: 1164 attttacagatagatttcaataattg-agatttagcaacaccaggatcacccatcaagca 1106
Query: 817 aatgttaatatcaccttttgattttaaaacatccccgacttttttttctacaccgccc 874
|||||||||||||||| | ||||| | ||||||||||||||||||| |||||||||
Sbjct: 1105 aatgttaatatcacctctgatttttagaccatccccgacttttttttcaacaccgccc 1048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6188
Number of Sequences: 1807
Number of extensions: 6188
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)