BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF02FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1574 1229 0.0
>3x_Contig1574
Length = 8021
Score = 1229 bits (620), Expect = 0.0
Identities = 663/676 (98%), Gaps = 1/676 (0%)
Strand = Plus / Minus
Query: 88 tggtctaagagcccaagtttcatctcaaccaatggctgtccgctgagatggttgtttaag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3811 tggtctaagagcccaagtttcatctcaaccaatggctgtccgctgagatggttgtttaag 3752
Query: 148 tcgatacaacccttgatatgtccggttaacagtttccccttttccacaatagcgttaatt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3751 tcgatacaacccttgatatgtccggttaacagtttccccttttccacaatagcgttaatt 3692
Query: 208 tcctcactcatatcgatgaatatttcgttattagcatagttgatgccgctcattctccat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3691 tcctcactcatatcgatgaatatttcgttattagcatagttgatgccgctcattctccat 3632
Query: 268 gggacaccagattcatcaacggaatgatcaactaacgaggagccaggagacccaacgtgg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3631 gggacaccagattcatcaacggaatgatcaactaacgaggagccaggagacccaacgtgg 3572
Query: 328 aacgaggaaacggatgaagcggatgaagatggatatctactgccactaaaccttgatttt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3571 aacgaggaaacggatgaagcggatgaagatggatatctactgccactaaaccttgatttt 3512
Query: 388 tccggaccattcttaaacattgacccgtccggttgttgtaaggtcttggtaattgtattg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3511 tccggaccattcttaaacattgacccgtccggttgttgtaaggtcttggtaattgtattg 3452
Query: 448 gttgtcgtcttcaacaatttcgataaatcgtttctacttgggaccattgcctttaaacgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3451 gttgtcgtcttcaacaatttcgataaatcgtttctacttgggaccattgcctttaaacgg 3392
Query: 508 ttcgagtctgttatcaccggttgcccagcatcaaggatacaatggaaaagcatcgataat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3391 ttcgagtctgttatcaccggttgcccagcatcaaggatacaatggaaaagcatcgataat 3332
Query: 568 cgatcgaggttattatttatcttctgcttcgttaattggtccttatcgaaatattgtaac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3331 cgatcgaggttattatttatcttctgcttcgttaattggtccttatcgaaatattgtaac 3272
Query: 628 aacagtaaaactatcttttttaacaaagataccacggaaactgtggactcttaacaccaa 687
||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 3271 aacagtaaatctatctcttctaacaaagataccacggaaactgtggactctgaacacgaa 3212
Query: 688 attaacccccaataaacacctggattcaacaaaagaaacgtgtctgcaaagcttcaactc 747
||||| | |||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct: 3211 attaaacaccaataaacaactggattcagc-aaagaaacgtgtctgcaaagcttcaactc 3153
Query: 748 aaaaattatttcattg 763
| || |||| ||||||
Sbjct: 3152 agaatttatctcattg 3137
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6606
Number of Sequences: 1807
Number of extensions: 6606
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)