BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF02RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1570 0.0
>3x_Contig1698
Length = 21001
Score = 1570 bits (792), Expect = 0.0
Identities = 825/835 (98%), Gaps = 1/835 (0%)
Strand = Plus / Plus
Query: 49 aaatccanaatttgttgaagtaatttctgaatatctgaagtcgccacttcgaggattttc 108
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12678 aaatccagaatttgttgaagtaatttctgaatatctgaagtcgccacttcgaggattttc 12737
Query: 109 gtaaagatctcaacatcaacaatgacattttctactagacatctttgaagcaactgccta 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12738 gtaaagatctcaacatcaacaatgacattttctactagacatctttgaagcaactgccta 12797
Query: 169 caaaccgtttcagaataattatctatcatatgcaaacacttgataacatcttcggctgaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12798 caaaccgtttcagaataattatctatcatatgcaaacacttgataacatcttcggctgaa 12857
Query: 229 actatttcgcttaaaactcccagcgcaatggttctgcgctgtgatttttcagaagcagca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12858 actatttcgcttaaaactcccagcgcaatggttctgcgctgtgatttttcagaagcagca 12917
Query: 289 attgtcttgaataaatcaaaggcatatttgctgaattcatcatactcaatatcgagctga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12918 attgtcttgaataaatcaaaggcatatttgctgaattcatcatactcaatatcgagctga 12977
Query: 349 ctataaatttgttgaaggccattaacaacgtataagaataagtcaaatgaatcgctgtct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12978 ctataaatttgttgaaggccattaacaacgtataagaataagtcaaatgaatcgctgtct 13037
Query: 409 atattaggcaactcaccatcaaacaaatgagaaaaataacttttcttaacgacacgtttc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13038 atattaggcaactcaccatcaaacaaatgagaaaaataacttttcttaacgacacgtttc 13097
Query: 469 ttaaacttcatatcacctaatgcataattacccaccttggacaataggttatcaatagtt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13098 ttaaacttcatatcacctaatgcataattacccaccttggacaataggttatcaatagtt 13157
Query: 529 tcctgtacctgcgtagaaagtaaactgcctgacatcgttttctttagacggaaaataata 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13158 tcctgtacctgcgtagaaagtaaactgcctgacatcgttttctttagacggaaaataata 13217
Query: 589 gcagctacatcaaaagaattcacagggaatctgctcattttgcttaacttcggggaatat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13218 gcagctacatcaaaagaattcacagggaatctgctcattttgcttaacttcggggaatat 13277
Query: 649 tgcaacaaaatgtgatcatagctagaagttgaatcatttgaaaacaaaaggtattccgga 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13278 tgcaacaaaatgtgatcatagctagaagttgaatcatttgaaaacaaaaggtattccgga 13337
Query: 709 gatgatactttcttaatgatctcgtcagtaaaggataagtacaattcgacaagattatga 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13338 gatgatactttcttaatgatctcgtcagtaaaggataagtacaattcgacaagattatga 13397
Query: 769 ggtatactttcaacgttagaaagtagatttctaatacctacttaagactctcctaacacc 828
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 13398 ggtatactttcaacgttagaaagtagatttctaatacctacttcagactctcctagcacc 13457
Query: 829 agcatatttctggaaaaaattaagtaaccaactgacgattactgacttttttggg 883
||||||||||| |||||| |||||||||| ||||||| ||||||| |||||||
Sbjct: 13458 agcatatttct-gaaaaatataagtaaccacttgacgataactgactcttttggg 13511
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7184
Number of Sequences: 1807
Number of extensions: 7184
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)