BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZF03RM1.SCF screened BAC_end (915 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1423 1152 0.0 >3x_Contig1423 Length = 8454 Score = 1152 bits (581), Expect = 0.0 Identities = 633/645 (98%), Gaps = 4/645 (0%) Strand = Plus / Plus Query: 26 gctttgactccttccc-aatggatgtctacgccgactacgccactgcttccaagaagaag 84 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5507 gctttgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaag 5566 Query: 85 ttgtaaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgt 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5567 ttgtaaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgt 5626 Query: 145 cagtatgttttctctgaaacaataatatattgttgacattttaccaattgttccttttct 204 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 5627 cagtatgttttctctgaaacaataatatattgttgacattttaccaattgttcctcttct 5686 Query: 205 cttcacaagctacatatcatatatattcacactcattataattgaccttaaccctttagg 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5687 cttcacaagctacatatcatatatattcacactcattataattgaccttaaccctttagg 5746 Query: 265 atcgatcataataaatgatcaatatacgtgacaaactaactaaggg-aaactatatgact 323 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 5747 atcgatcataataaatgatcaatatacgtgacaaactaactaaggggaaactatatgact 5806 Query: 324 gtcctatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagaga 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5807 gtcctatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagaga 5866 Query: 384 tagtgataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaag 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5867 tagtgataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaag 5926 Query: 444 atacgccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacag 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5927 atacgccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacag 5986 Query: 504 tagtctttcttccggttgaccttttttttttattactttacagtatttttttacctttta 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5987 tagtctttcttccggttgaccttttttttttattactttacagtatttttttacctttta 6046 Query: 564 agactttttttttttttaataattaattgatattacactataataataattcaaataaaa 623 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| Sbjct: 6047 agactttttttttttttaataattaatagatataacactataataataattcaaat-aaa 6105 Query: 624 acatttaaggattttcaccattaaatacagccgagtagaatggaa 668 ||| ||||||| | ||||||||||||| ||| ||||||| ||||| Sbjct: 6106 acagttaagga-tatcaccattaaatagagcggagtagattggaa 6149 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,875 Number of Sequences: 1807 Number of extensions: 19875 Number of successful extensions: 234 Number of sequences better than 1.0e-20: 1 length of query: 915 length of database: 10,358,551 effective HSP length: 16 effective length of query: 899 effective length of database: 10,329,639 effective search space: 9286345461 effective search space used: 9286345461 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)