BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZF03RM1.SCF screened BAC_end
         (915 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1423                                                        1152   0.0  

>3x_Contig1423 
          Length = 8454

 Score = 1152 bits (581), Expect = 0.0
 Identities = 633/645 (98%), Gaps = 4/645 (0%)
 Strand = Plus / Plus

                                                                        
Query: 26   gctttgactccttccc-aatggatgtctacgccgactacgccactgcttccaagaagaag 84
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5507 gctttgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaag 5566

                                                                        
Query: 85   ttgtaaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgt 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5567 ttgtaaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgt 5626

                                                                        
Query: 145  cagtatgttttctctgaaacaataatatattgttgacattttaccaattgttccttttct 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5627 cagtatgttttctctgaaacaataatatattgttgacattttaccaattgttcctcttct 5686

                                                                        
Query: 205  cttcacaagctacatatcatatatattcacactcattataattgaccttaaccctttagg 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5687 cttcacaagctacatatcatatatattcacactcattataattgaccttaaccctttagg 5746

                                                                        
Query: 265  atcgatcataataaatgatcaatatacgtgacaaactaactaaggg-aaactatatgact 323
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5747 atcgatcataataaatgatcaatatacgtgacaaactaactaaggggaaactatatgact 5806

                                                                        
Query: 324  gtcctatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagaga 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5807 gtcctatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagaga 5866

                                                                        
Query: 384  tagtgataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaag 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5867 tagtgataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaag 5926

                                                                        
Query: 444  atacgccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacag 503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5927 atacgccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacag 5986

                                                                        
Query: 504  tagtctttcttccggttgaccttttttttttattactttacagtatttttttacctttta 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5987 tagtctttcttccggttgaccttttttttttattactttacagtatttttttacctttta 6046

                                                                        
Query: 564  agactttttttttttttaataattaattgatattacactataataataattcaaataaaa 623
            ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 6047 agactttttttttttttaataattaatagatataacactataataataattcaaat-aaa 6105

                                                         
Query: 624  acatttaaggattttcaccattaaatacagccgagtagaatggaa 668
            ||| ||||||| | ||||||||||||| ||| ||||||| |||||
Sbjct: 6106 acagttaagga-tatcaccattaaatagagcggagtagattggaa 6149


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,875
Number of Sequences: 1807
Number of extensions: 19875
Number of successful extensions: 234
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)