BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZF04FM1.SCF screened BAC_end (909 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig430 1017 0.0 >3x_Contig430 Length = 1969 Score = 1017 bits (513), Expect = 0.0 Identities = 603/625 (96%), Gaps = 6/625 (0%) Strand = Plus / Plus Query: 87 gcataattgggcattggcaaacttcgaggtcacttcgtcgcttacccagcgaatcaaaga 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 gcataattgggcattggcaaacttcgaggtcacttcgtcgcttacccagcgaatcaaaga 350 Query: 147 tgacaaagttctaacacttgaagacgcctctacggagtttaccaatggtgccgtggcagg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 tgacaaagttctaacacttgaagacgcctctacggagtttaccaatggtgccgtggcagg 410 Query: 207 gcttggcgcgattgaaaatttccctccagaactggtccaacgtcatgtcgtgccagccat 266 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 gcttggcgcgaatgaaaatttccctccagaactggtccaacgtcatgtcgtgccagccat 470 Query: 267 caaaggttttttccgttctattgctctttcccaatcgagttctttacaggatacgttaag 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 caaaggttttttccgttctattgctctttcccaatcgagttctttacaggatacgttaag 530 Query: 327 attactcactttgtggttcaaattcggtggtattccagaagctgcacaagctatgcatga 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 attactcactttgtggttcaaattcggtggtattccagaagctgcacaagctatgcatga 590 Query: 387 aggctttggattgatcaagatcgataactggttagaagttatcccacaattgatctcccg 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 591 aggctttggattgatcaagatcgataactggttagaagttatcccacaattgatctcccg 650 Query: 447 aattcatcaaccaaatcaaaccgttagtagatctttactatctttgctagctgatttggg 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 651 aattcatcaaccaaatcaaaccgttagtagatctttactatctttgctagctgatttggg 710 Query: 507 taaagcccatccacaggcattagtgtatccattgacagttgccattaaatctgattcggt 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 711 taaagcccatccacaggcattagtgtatccattgacagttgccattaaatctgattcggt 770 Query: 567 ctcaaga-agaaggcagctttgtccatcatagataagatgaaaaatgacacgccttaaac 625 ||||||| ||| ||||||||||||||||||||||||||||| || ||| | | ||||| Sbjct: 771 ctcaagacagagggcagctttgtccatcatagataagatgagaatgcaca-gtcctaaac 829 Query: 626 ttgtcgatcaggcagaatta-ttagtgacgaatttgattagaatcgttgttttttgg-ac 683 |||||||||| ||||||||| | ||||||||| ||||| ||| ||| |||||| ||| || Sbjct: 830 ttgtcgatcaagcagaattagtaagtgacgaa-ttgatcagagtcgctgttttgtggcac 888 Query: 684 gaaactttggtccaaaggtcttgaa 708 | ||||||||| | ||||||||||| Sbjct: 889 g-aactttggtacgaaggtcttgaa 912 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6440 Number of Sequences: 1807 Number of extensions: 6440 Number of successful extensions: 50 Number of sequences better than 1.0e-20: 1 length of query: 909 length of database: 10,358,551 effective HSP length: 16 effective length of query: 893 effective length of database: 10,329,639 effective search space: 9224367627 effective search space used: 9224367627 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)