BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF04RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1156 0.0
>3x_Contig1800
Length = 38778
Score = 1156 bits (583), Expect = 0.0
Identities = 642/658 (97%), Gaps = 3/658 (0%)
Strand = Plus / Plus
Query: 46 ttaaggtgagggactataaaaggaacgaagtaagaaatagagagatgcagaagtaatctt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25879 ttaaggtgagggactataaaaggaacgaagtaagaaatagagagatgcagaagtaatctt 25938
Query: 106 ttctcaattggactatcatccattaaagattatactgaactttcaacaataagttacaag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25939 ttctcaattggactatcatccattaaagattatactgaactttcaacaataagttacaag 25998
Query: 166 aagaattgaccataacggtaatagaataaagatgtctactagcaacgaatcgccatcatt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25999 aagaattgaccataacggtaatagaataaagatgtctactagcaacgaatcgccatcatt 26058
Query: 226 gaaattgaacactggagcctccatccctgttgttgggttaggtacctggaaatcacctga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26059 gaaattgaacactggagcctccatccctgttgttgggttaggtacctggaaatcacctga 26118
Query: 286 agaagatgcttacaacgctgttgtatcagcgttgcaaaatgggtacagacacattgacac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26119 agaagatgcttacaacgctgttgtatcagcgttgcaaaatgggtacagacacattgacac 26178
Query: 346 tgcagctatctacggaaacgaagaagctgttggcaaaggtatcagagactctggtgtacc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26179 tgcagctatctacggaaacgaagaagctgttggcaaaggtatcagagactctggtgtacc 26238
Query: 406 aagagaagaaatctttgttaccaccaagttgtggggtacccaacaaagagatccagaggc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26239 aagagaagaaatctttgttaccaccaagttgtggggtacccaacaaagagatccagaggc 26298
Query: 466 agctcttgatctctctttgcaaagattgnggttggactacgtcgacctctacttgattca 525
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 26299 agctcttgatctctctttgcaaagattggggttggactacgtcgacctctacttgattca 26358
Query: 526 ctggccagtttctttgaatgccagttctatcactgaccgtaactacctaacttt-tcaag 584
|||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 26359 ctggccagttcctttgaatgccagttctatcactgacggtaactacctaactttcccaag 26418
Query: 585 aactgctgatggaaagatcgacattgacatggaagaat-gaatttcttcaaaacctggga 643
|||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||
Sbjct: 26419 aactgctgatggaaagatcgacattgacatcgaagaatggaatttcatcaaaacctggga 26478
Query: 644 aaagatggcacatttgccaaaatccggcaaga-caaagcccttggggtttccaccttt 700
||||||| |||| |||||||||||||||||| ||| ||| |||| ||||||| ||||
Sbjct: 26479 aaagatgcaacatctgccaaaatccggcaagaccaaggccattggtgtttccaacttt 26536
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7925
Number of Sequences: 1807
Number of extensions: 7925
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)