BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF05FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig952 1118 0.0
>3x_Contig952
Length = 3817
Score = 1118 bits (564), Expect = 0.0
Identities = 610/620 (98%), Gaps = 4/620 (0%)
Strand = Plus / Minus
Query: 89 tataactccagtggatgaaaatcctcatcttcacaacaaagctttaaaaacttgatactg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 tataactccagtggatgaaaatcctcatcttcacaacaaagctttaaaaacttgatactg 1266
Query: 149 ctattctgaatttgattcgactgccaatgcggtaatctggccgacgaagtgtattcttga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 ctattctgaatttgattcgactgccaatgcggtaatctggccgacgaagtgtattcttga 1206
Query: 209 ctcgttttttttttcgttaaagtttggatgtactggattttgtactgctgaaaagattgt 268
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 ctcgttttttccctcgttaaagtttggatgtactggattttgtactgctgaaaagattgt 1146
Query: 269 acctttactgttttaaactgtatgtccattgttgtcatctggcgcttcggaagatcataa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 acctttactgttttaaactgtatgtccattgttgtcatctggcgcttcggaagatcataa 1086
Query: 329 gataaaaactcttcataaagttccgattctcgttgtaccaacctgctatgcattactgga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 gataaaaactcttcataaagttccgattctcgttgtaccaacctgctatgcattactgga 1026
Query: 389 aattcacaagagtgtctaagtgttctccctagcggttgtaaaaagtcctcatttaaccga 448
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1025 aattcacaagagtgtctaagtgttct-cctagcggttgtaaaaagtcctcatttaaccga 967
Query: 449 tatttagcatgtacattttgatcgaatttattcaacctaacagaaaggtccaactttgtt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tatttagcatgtacattttgatcgaatttattcaacctaacagaaaggtccaactttgtt 907
Query: 509 aaggcagcactgaacaaatctttcacattatctctaactataatcttttctttgtatagt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 aaggcagcactgaacaaatctttcacattatctctaactataatcttttctttgtatagt 847
Query: 569 gatcttgtatctacattctgattgctgttatatggtgccttgcatttccatttcggatta 628
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 846 gatcttgtatctacattctgattgctgttatatggtgccttgcatttccattccggatta 787
Query: 629 ttccagggccggatgtattcctttgactaaaattgcaggggtatcgaattcaatgatttt 688
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |
Sbjct: 786 ttccagggccggatgta-tcctttgactaaaattgcagtggtatcgaattcaatga-tat 729
Query: 689 atttcacccaaagatgatcc 708
|||||| |||||||||||||
Sbjct: 728 atttca-ccaaagatgatcc 710
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,577
Number of Sequences: 1807
Number of extensions: 10577
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)