BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF05RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1348 0.0
>3x_Contig1738
Length = 21411
Score = 1348 bits (680), Expect = 0.0
Identities = 695/700 (99%)
Strand = Plus / Plus
Query: 45 cttccgaaggtgtataagagaacgatggccaggcattatagtcccaccacaagagccatc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9715 cttccgaaggtgtataagagaacgatggccaggcattatagtcccaccacaagagccatc 9774
Query: 105 accacgcaaaatgggtatgatatttcaaagatttcagctcttggtgagatgatacataat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9775 accacgcaaaatgggtatgatatttcaaagatttcagctcttggtgagatgatacataat 9834
Query: 165 tttaaacccatcttcctctttgcgccggagtttggtgtcgtcaatatcaatgcaattgca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9835 tttaaacccatcttcctctttgcgccggagtttggtgtcgtcaatatcaatgcaattgca 9894
Query: 225 atgcagttacaaagttctaataacccggaagtcaataccgcactaaactcattattagtt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9895 atgcagttacaaagttctaataacccggaagtcaataccgcactaaactcattattagtt 9954
Query: 285 attagctccgataacactttatcaattccactcgataaatgtcgtgagcttttggataac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9955 attagctccgataacactttatcaattccactcgataaatgtcgtgagcttttggataac 10014
Query: 345 ctctgtatcttggcgtgtcagttactgcataaactattgaagaaggattattcaaggata 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10015 ctctgtatcttggcgtgtcagttactgcataaactattgaagaaggattattcaaggata 10074
Query: 405 tcagggtcttatactgaatatgatgaacagcagtggattaatacgcctcccaaacattcg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10075 tcagggtcttatactgaatatgatgaacagcagtggattaatacgcctcccaaacattcg 10134
Query: 465 gattcctctgatactcatattgataaaattttcaaggaaagcgtcaaaaaatctggagaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10135 gattcctctgatactcatattgataaaattttcaaggaaagcgtcaaaaaatctggagaa 10194
Query: 525 gatcaatctgaatatacagtaaaggtagactctttaactggtatagatttttctcaactt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10195 gatcaatctgaatatacagtaaaggtagactctttaactggtatagatttttctcaactt 10254
Query: 585 ccgatcacaccgacggaaccagaaatagaagtcgatgcgacattacctgaagtctcactg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10255 ccgatcacaccgacggaaccagaaatagaagtcgatgcgacattacctgaagtctcactg 10314
Query: 645 gagaaggacgaagatgagaatgatattgaatacttaccttgattgttgaaagacgaaaat 704
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 10315 gagaaggacgaagatgagaatgatattgaatacttacctgatttgttgaaagacgaaaat 10374
Query: 705 cttgatgaaatcaaaaagctccatttcatttcatatatgg 744
|| ||||||||||||||||| |||||||||||||||||||
Sbjct: 10375 ctcgatgaaatcaaaaagctacatttcatttcatatatgg 10414
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8797
Number of Sequences: 1807
Number of extensions: 8797
Number of successful extensions: 119
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)