BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZF06FM1.SCF screened BAC_end
         (997 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1572                                                         815   0.0  

>3x_Contig1572 
          Length = 12810

 Score =  815 bits (411), Expect = 0.0
 Identities = 486/505 (96%), Gaps = 7/505 (1%)
 Strand = Plus / Plus

                                                                        
Query: 88   tattcataatctttaatttcatctcatcgcatctcatcgcactgaacttttttttcctcg 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8892 tattcataatctttaatttcatctcatcgcatctcatcgcactgaacttttttttcctcg 8951

                                                                        
Query: 148  ccaaaaaaattttctgtaacgaaaagaaacacttccagtcacgtgaactgtgaaaccaag 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8952 ccaaaaaaattttctgtaacgaaaagaaacacttccagtcacgtgaactgtgaaaccaag 9011

                                                                        
Query: 208  atcttctgtttgacactcagacaagtagatgatcaattacaattacaattacaagctgac 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9012 atcttctgtttgacactcagacaagtagatgatcaattacaattacaattacaagctgac 9071

                                                                        
Query: 268  ctcgaatagggtactggcaagttggcgtttacctgggatgatctgttgctgcagcatggt 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9072 ctcgaatagggtactggcaagttggcgtttacctgggatgatctgttgctgcagcatggt 9131

                                                                        
Query: 328  gtaccccagcaagattctttagaattaaatgggaacatttcggaaagttacccaaagaat 387
            ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 9132 gtaccccagcaagattcttcacaattaaatgggaacatttcggaaagttacccaaagaat 9191

                                                                        
Query: 388  gggaagcaagttaaatagtcaaatagtcaaattgtgactgtctatatgtgaatcgtatat 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9192 gggaagcaagttaaatagtcaaatagtcaaattgtgactgtctatatgtgaatcgtatat 9251

                                                                        
Query: 448  acagagaccaattttaaagcagtttcccctatttacctgctggaggaaactagcactttt 507
            |||||||| |||||| |||||||||||||||| ||||||||| ||| ||||||||||| |
Sbjct: 9252 acagagacgaattttcaagcagtttcccctatctacctgctgcagg-aactagcacttct 9310

                                                                        
Query: 508  aacccggcagtaaaggttttccgtattagcttatgaaatcgttttatcttgggttttttg 567
            || ||||||||||| ||||||||||| |||| ||||||||||| ||||||||   |||||
Sbjct: 9311 aa-ccggcagtaaa-gttttccgtatcagctcatgaaatcgttatatcttgg--cttttg 9366

                                     
Query: 568  acactgggcttttcgaggtggcttt 592
            |||||||   |||||||||||||||
Sbjct: 9367 acactgg--ctttcgaggtggcttt 9389


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,713
Number of Sequences: 1807
Number of extensions: 24713
Number of successful extensions: 556
Number of sequences better than 1.0e-20: 1
length of query: 997
length of database: 10,358,551
effective HSP length: 16
effective length of query: 981
effective length of database: 10,329,639
effective search space: 10133375859
effective search space used: 10133375859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)