BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF06RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1682 1263 0.0
>3x_Contig1682
Length = 16889
Score = 1263 bits (637), Expect = 0.0
Identities = 698/713 (97%), Gaps = 4/713 (0%)
Strand = Plus / Plus
Query: 48 tgactatcgatgaagaaaccggtgaagatgttctcatcccaggtctacttgcctgtggtg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15437 tgactatcgatgaagaaaccggtgaagatgttctcatcccaggtctacttgcctgtggtg 15496
Query: 108 aagcagcttgtgtctctgttcacggtgctaacagattgggtgctaattccttgttagatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15497 aagcagcttgtgtctctgttcacggtgctaacagattgggtgctaattccttgttagatt 15556
Query: 168 tggtcgtgttcggtcgtgctgtcgctcatactatcgctgacactttgcaaccaggtttac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557 tggtcgtgttcggtcgtgctgtcgctcatactatcgctgacactttgcaaccaggtttac 15616
Query: 228 ctcataagccattgccagctgatttgggtaaggaatctatcgctaacttggacaagttga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15617 ctcataagccattgccagctgatttgggtaaggaatctatcgctaacttggacaagttga 15676
Query: 288 gaaatgctaccggtcacagaccaaccgctgatatcagattggccatgcaaaagaccatgc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15677 gaaatgctaccggtcacagaccaaccgctgatatcagattggccatgcaaaagaccatgc 15736
Query: 348 aaaaggatgtttctgtgttcagaactcaagcatccctagatgaaggtgtcaagaacatta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15737 aaaaggatgtttctgtgttcagaactcaagcatccctagatgaaggtgtcaagaacatta 15796
Query: 408 acgctgttgataagactttcgtcgatgttggaacaacagacagatccatgatctggaact 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15797 acgctgttgataagactttcgtcgatgttggaacaacagacagatccatgatctggaact 15856
Query: 468 ccgatttagtcgaaactctagagctacaaaacttgttgacctgtgctactcaaaccgcta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15857 ccgatttagtcgaaactctagagctacaaaacttgttgacctgtgctactcaaaccgcta 15916
Query: 528 agtctgctgctgaaagaaaggaatctcgtggtgctcacgctagagaagattaccctgaaa 587
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15917 agtctgctgctgaaagaaaggaatctcgtggtgctcacgctagagaagattatcctgaaa 15976
Query: 588 gagatgacgttcactggatgaaacataccctatcatggcaacgtgattccggtgacgatg 647
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 15977 gagatgacgttcactggatgaaacataccctatcatggcaacgtgataccggtgacgatg 16036
Query: 648 ttgtcttgaaatacagaaaagtcttcgcccccacctttggatgaaaagaaatgtcctcca 707
| ||||||||||||||||| ||| ||||| ||||| |||||||||||| |||||||||||
Sbjct: 16037 tcgtcttgaaatacagaaaggtcatcgccaccacc-ttggatgaaaaggaatgtcctcca 16095
Query: 708 gtcccacaaactgtttgaagcttatttagccagtttaaatggtgtcctttttt 760
||||||| ||||||| | |||||||| || |||||| ||| ||||||||||||
Sbjct: 16096 gtcccaccaactgttag-agcttattaag-cagttt-aattgtgtcctttttt 16145
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,919
Number of Sequences: 1807
Number of extensions: 15919
Number of successful extensions: 502
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)