BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF07FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig640 952 0.0
>3x_Contig640
Length = 3164
Score = 952 bits (480), Expect = 0.0
Identities = 546/564 (96%), Gaps = 3/564 (0%)
Strand = Plus / Plus
Query: 88 ctacattgggttcattagaagctttattagacttcttaaaagacatgaaaattcctgtta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 ctacattgggttcattagaagctttattagacttcttaaaagacatgaaaattcctgtta 1189
Query: 148 tgtctgtcggattaggtcctgtttacaagcgtgatataatgaaggcttgtactatgttag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 tgtctgtcggattaggtcctgtttacaagcgtgatataatgaaggcttgtactatgttag 1249
Query: 208 aaaaagctcctgaattatcggttatgctatgctttgatgtcaaggttgataaggaagcag 267
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 aaaaagctcctgaattagcggttatgctatgctttgatgtcaaggttgataaggaagcag 1309
Query: 268 aacaatatgctgcagaacaacatatcaaaattttcaatgctgatattatttaccatttat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 aacaatatgctgcagaacaacatatcaaaattttcaatgctgatattatttaccatttat 1369
Query: 328 tcgatgccttcacagcctaccagaaggaactacttgaaaagcgtcgtgctgagtttatcg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 tcgatgccttcacagcctaccagaaggaactacttgaaaagcgtcgtgctgagtttatcg 1429
Query: 388 gtgacgctaccttcccatgcgttctgaacactctacaaatcattaacaagcgtggcccta 447
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1430 gtgacgctaccttcccatgcgtcctgaacactctacaaatcattaacaagcgtggcccta 1489
Query: 448 tgatcattggtgtggatgtcattgaaggttcattgaagatcggtacttctatctgtgcag 507
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1490 tgatcattggtgtggatgtcattgaaggttcattgaagatcggtactcctatctgtgcag 1549
Query: 508 tgaaatatgacccagcaacaaaggagaaaataacattgttgctttgtagagtcacttcct 567
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 1550 tgaaatatgacccagcaacaaaggagagaataacattgttgcttggtagagtcacttcct 1609
Query: 568 ttggaattaat-accaatctgtgacttgagtcaa-aaaggtcaaacc-atgccagtgttg 624
| | ||| ||| |||||||||||||| |||||| || ||||||||| |||| ||||||
Sbjct: 1610 tggaaatcaatcaccaatctgtgactgaagtcaagaagggtcaaaccaatgcaggtgttg 1669
Query: 625 caatgcgttaagaaaatccttccg 648
||||||||| |||| |||||||||
Sbjct: 1670 caatgcgtttagaagatccttccg 1693
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9653
Number of Sequences: 1807
Number of extensions: 9653
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)