BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF08FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1205 0.0
>3x_Contig1772
Length = 25851
Score = 1205 bits (608), Expect = 0.0
Identities = 636/644 (98%), Gaps = 1/644 (0%)
Strand = Plus / Plus
Query: 86 tctgatattgcgcagaagagctgcggaattttcactagcggctggagaatccgctgtgtt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6522 tctgatattgcgcagaagagctgcggaattttcactagcggctggagaatccgctgtgtt 6581
Query: 146 cccagcgcgagctgaatcttgagttatagaaccatagttcccagtagaggattgtccagc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6582 cccagcgcgagctgaatcttgagttatagaaccatagttcccagtagaggattgtccagc 6641
Query: 206 aggtgcggtacttttttctccagctgcttcttcgatatcgtaggagttccctggagcagc 265
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6642 aggtgcggtaccggcttctccagctgcttcttcgatatcgtaggagttccctggagcagc 6701
Query: 266 caactcttcatcttcagtgtcctcatattcgtcttcatcatctcttccaggtcttgtgat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6702 caactcttcatcttcagtgtcctcatattcgtcttcatcatctcttccaggtcttgtgat 6761
Query: 326 attgatgtgagttgggatggcgggtttcctgatatcaacatccatttgaggtagccaaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6762 attgatgtgagttgggatggcgggtttcctgatatcaacatccatttgaggtagccaaaa 6821
Query: 386 tggaatagaactgactctgtcgttgagaagtgacgcgacaccgtgaatgaatttagaaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6822 tggaatagaactgactctgtcgttgagaagtgacgcgacaccgtgaatgaatttagaaaa 6881
Query: 446 cttaggcacaggttcaactaaatgcgagcccactaattctctgacccattctggaggctc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6882 cttaggcacaggttcaactaaatgcgagcccactaattctctgacccattctggaggctc 6941
Query: 506 ttgacccatttgagtttgtagtttgacttccaaaacagcgtaagggaatctacaaatgtc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6942 ttgacccatttgagtttgtagtttgacttccaaaacagcgtaagggaatctacaaatgtc 7001
Query: 566 tttttcaggcaactgattgaatggccaatctacaccaatatccattcttcttcagttacc 625
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7002 tttttcaggcaactgattgaatggccaatctacaccaatatccattcttctccagttacc 7061
Query: 626 gttggttctgtcatgaccatcaaagttatcctcccttaccatggacaattcagtatctaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7062 gttggttctgtcatgaccatcaaagttatcctcccttaccatggacaattcagtatctaa 7121
Query: 686 agaaatacgcacgcgggcattaccaggcaaatgggaaagcagtt 729
|||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 7122 agaaatacgcacgcgggcatcaccaggc-aattggaaagcagtt 7164
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6737
Number of Sequences: 1807
Number of extensions: 6737
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)