BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZF08RM1.SCF screened BAC_end
         (972 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig640                                                         1201   0.0  

>3x_Contig640 
          Length = 3164

 Score = 1201 bits (606), Expect = 0.0
 Identities = 651/662 (98%), Gaps = 3/662 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   tattagacttcttaaaagacatgaaaattcctgttatgtctgtcggattaggtcctgttt 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 tattagacttcttaaaagacatgaaaattcctgttatgtctgtcggattaggtcctgttt 1213

                                                                        
Query: 108  acaagcgtgatataatgaaggcttgtactatgttagaaaaagctcctgaattagcggtta 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 acaagcgtgatataatgaaggcttgtactatgttagaaaaagctcctgaattagcggtta 1273

                                                                        
Query: 168  tgctatgctttgatgtcaaggttgataaggaagcagaacaatatgctgcttaacaacata 227
            |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 1274 tgctatgctttgatgtcaaggttgataaggaagcagaacaatatgctgcagaacaacata 1333

                                                                        
Query: 228  tcaaaattttcaatgctgatattatttaccatttattcgatgccttcacagcctaccaga 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 tcaaaattttcaatgctgatattatttaccatttattcgatgccttcacagcctaccaga 1393

                                                                        
Query: 288  aggaactacttgaaaagcgtcgtgctgagtttatcggtgacgctaccttcccatgcgtcc 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 aggaactacttgaaaagcgtcgtgctgagtttatcggtgacgctaccttcccatgcgtcc 1453

                                                                        
Query: 348  tgaacactctacaaatcattaacaagcgtggccctatgatcattggtgtggatgtcattg 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 tgaacactctacaaatcattaacaagcgtggccctatgatcattggtgtggatgtcattg 1513

                                                                        
Query: 408  aaggttcattgaagatcggtactcctatctgtgcagtgaaatatgacccagcaacaaagg 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 aaggttcattgaagatcggtactcctatctgtgcagtgaaatatgacccagcaacaaagg 1573

                                                                        
Query: 468  agagaataacattgttgcttggtagagtcacttccttggaaatcaatcaccaatctgtga 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 agagaataacattgttgcttggtagagtcacttccttggaaatcaatcaccaatctgtga 1633

                                                                        
Query: 528  ctgaagtcaagaagggtcaaaccaatgcaggtgttgcaatgcgtttagaagatccttccg 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 ctgaagtcaagaagggtcaaaccaatgcaggtgttgcaatgcgtttagaagatccttccg 1693

                                                                        
Query: 588  gtcagcaaccaatcttgggtcgtcatgttgatgaaaaagatacatttgattctcacatca 647
            ||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 1694 gtcagcaaccaatctggggtcgtcatgttgatgaaaaagatacattgtattctcacatca 1753

                                                                        
Query: 648  ctagaaaggccattgattcattgaaaggatcctgcttttcagagatcaagtttccaaaat 707
            |||||| | |||||||| |||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 1754 ctagaaggtccattgatacattgaaa-gatcctgc-tttcagagatcaag-ttccaaaat 1810

              
Query: 708  ct 709
            ||
Sbjct: 1811 ct 1812


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7943
Number of Sequences: 1807
Number of extensions: 7943
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)