BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF09FM1.SCF screened BAC_end
(858 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 730 0.0
>3x_Contig1517
Length = 8289
Score = 730 bits (368), Expect = 0.0
Identities = 432/452 (95%), Gaps = 1/452 (0%)
Strand = Plus / Plus
Query: 24 tctttggacctgctcatgtatggcaattgagctatgttccatactcccccattttctaat 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5368 tctttggacctgctcatgtatggcaattgagctatgttccatactcccccattttctaat 5427
Query: 84 gcttctttcgatactaaacaatccatcactgaatcttatcgcgatagtttgaattcgacg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5428 gcttctttcgatactaaacaatccatcactgaatcttatcgcgatagtttgaattcgacg 5487
Query: 144 acccctacaattagcgatgcaaagaaaccgaatgtcatgcttcaaactgccagcacatcg 203
| | | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5488 atttccaataatagcgatgcaaagaaaccgaatgtcatgcttcaaactgccagcacatcg 5547
Query: 204 gcacctccatcaccagaactaccaatagaatcttcagaatccaatgatgatttgattccc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5548 gcacctccatcaccagaactaccaatagaatcttcagaatccaatgatgatttgattccc 5607
Query: 264 attgctagtatacctgatgaattgatgaaattgattgatttgttcattgatgatttgaaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5608 attgctagtatacctgatgaattgatgaaattgattgatttgttcattgatgatttgaaa 5667
Query: 324 cagcctaaatattccaggcctttaatgactacacaattatctcagatattccaaagggtt 383
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 5668 cagcctaaatattccaggcctttaatgattacacaattatctcagatattccaaa-ggtt 5726
Query: 384 ttatgagagattcgatagatcctgccaacaacatttcaatgcattagcctcgcccggaaa 443
|||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct: 5727 ttatgagagatttgatagatcttgccaacaacattttaatgcattagcctcgcctggaag 5786
Query: 444 ggagaaagtaaggctcaacgcaagagaaacga 475
| ||| || | ||||||||| ||||||||||
Sbjct: 5787 tgtgaatgttatgctcaacgcgagagaaacga 5818
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7668
Number of Sequences: 1807
Number of extensions: 7668
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 858
length of database: 10,358,551
effective HSP length: 16
effective length of query: 842
effective length of database: 10,329,639
effective search space: 8697556038
effective search space used: 8697556038
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)