BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF09RM1.SCF screened BAC_end
(1058 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 654 0.0
>3x_Contig1426
Length = 8319
Score = 654 bits (330), Expect = 0.0
Identities = 389/402 (96%), Gaps = 5/402 (1%)
Strand = Plus / Plus
Query: 27 gcagatgt-tatttgcc-gcaaatt-atggatgattccttttttaaaaagtactccggat 83
|||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5950 gcagatgtatatttgccagcaaattcatggatgattccttttttaaaaagtactccggat 6009
Query: 84 ttgatcgcttctgagagaatccatcttagagacatatcacttaaaaaatgatttttctca 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6010 ttgatcgcttctgagagaatccatcttagagacatatcacttaaaaaatgatttttctca 6069
Query: 144 gtgatatccggtggccaactcccaccaatatctgagtgatcgcctggaaaccacttctct 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6070 gtgatatccggtggccaactcccaccaatatctgagtgatcgcctggaaaccacttctct 6129
Query: 204 attagatccgatgatgtccttttactatcaaaagtaccatggggagagtccacctcgaat 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6130 attagatccgatgatgtccttttactatcaaaagtaccatggggagagtccacctcgaat 6189
Query: 264 ataccttcaactctctggttcacgaaattatctgttctttgggaatgttccagctctaag 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6190 ataccttcaactctctggttcacgaaattatctgttctttgggaatgttccagctctagg 6249
Query: 324 aaattgttgattcgggatattagttcttgtacggacttacttaattgtgattgggatgaa 383
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 6250 aaattgttgattcgggatattagttcttgtacggacttactagattgtgattgtgatgaa 6309
Query: 384 ttaggtctttgacccatgggtttgatttattaaattggttac 425
||||||| |||| ||| ||| ||||||| ||||||||||||
Sbjct: 6310 ttaggtc-ttgagccaatggtatgattta-taaattggttac 6349
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,662
Number of Sequences: 1807
Number of extensions: 21662
Number of successful extensions: 315
Number of sequences better than 1.0e-20: 1
length of query: 1058
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1042
effective length of database: 10,329,639
effective search space: 10763483838
effective search space used: 10763483838
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)