BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZF10FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig319 1072 0.0
>3x_Contig319
Length = 1317
Score = 1072 bits (541), Expect = 0.0
Identities = 628/653 (96%), Gaps = 3/653 (0%)
Strand = Plus / Minus
Query: 88 cgaatatctatgaatactttccagaccttgacacatgaattgtacgatgttctacagtta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 cgaatatctatgaatactttccagaccttgacacatgaattgtacgatgttctacagtta 1212
Query: 148 atatcgacagacttgcaagaatctcatttgagggaagcaaatctcatcgatatgcgtgaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 atatcgacagacttgcaagaatctcatttgagggaagcaaatctcatcgatatgcgtgaa 1152
Query: 208 cagctcttgcaaacagatcaaaaactaaacaatatactatcttccggagttatggtgaag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 cagctcttgcaaacagatcaaaaactaaacaatatactatcttccggagttatggtgaag 1092
Query: 268 atgaagattcttcagtctcagcttgacaatcaaaagaaaaaattacatcagttagaagga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 atgaagattcttcagtctcagcttgacaatcaaaagaaaaaattacatcagttagaagga 1032
Query: 328 gaaacaaaggcaaaacaaatcgaaaattcggaaacactacaattattgcagaggcaatac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 gaaacaaaggcaaaacaaatcgaaaattcggaaacactacaattattgcagaggcaatac 972
Query: 388 acagatgaagtggttcctgacctacgggcagccgaggagcaggttgagaatgatttggcc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 acagatgaagtggttcctgacctacgggcagccgaggagcaggttgagaatgatttggcc 912
Query: 448 aatggcacaattaagaattatgattacgaaatatcacagctaaagcaggcgtttcaaacg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 aatggcacaattaagaattatgattacgaaatatcacagctaaagcaggcgtttcaaacg 852
Query: 508 gaaatcgacgctatcgatcttgagtactcgctcttatcctcgcacattaatagatacatt 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gaaatcgacgctatcgatcttgagtactcgctcttatcctcgcacattaatagatacatg 792
Query: 568 gaagagatgctacgtgttatggtaggaggttacttcttaactggtagcgtggcctttttt 627
|||||||||||||||||||||||| |||||||||||||| |||||||||| |||| | ||
Sbjct: 791 gaagagatgctacgtgttatggta-gaggttacttcttagctggtagcgt-gcctctctt 734
Query: 628 at-gatacacatttattatttattcaaccccacatttttaaaatttagttttgacggaaa 686
|| ||||||||||||| |||||| ||| ||||||| |||| | | |||| |||||||||
Sbjct: 733 atagatacacatttatcatttatacaaacccacatatttagatatcagttatgacggaaa 674
Query: 687 aaatactgaacgtaaaaatacccctttttttgatcccaataaggactttttct 739
|| ||||||||||||||| || || | |||||||||||||| || ||||||
Sbjct: 673 aataactgaacgtaaaaatcaccattatcttgatcccaataagtacattttct 621
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7188
Number of Sequences: 1807
Number of extensions: 7188
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)