BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZF10RM1.SCF screened BAC_end (901 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1554 1055 0.0 >3x_Contig1554 Length = 8957 Score = 1055 bits (532), Expect = 0.0 Identities = 625/648 (96%), Gaps = 6/648 (0%) Strand = Plus / Plus Query: 48 tctaaatctgcatcaaaacc-gcaccttcgttaagtttagctgttaacccaattctcctc 106 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 7905 tctaaatctgcatcaaaaccagcaccttcgttaagtttagctgttaacccaattctcctc 7964 Query: 107 gaaaattgggcaccacaattaccagtcctatctactgacttcaagacccaaacatctgtt 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7965 gaaaattgggcaccacaattaccagtcctatctactgacttcaagacccaaacatctgtt 8024 Query: 167 ttttcgagattgaagttccctcatatgaggaaagcaccatatgcaaaggatctggtcttt 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8025 ttttcgagattgaagttccctcatatgaggaaagcaccatatgcaaaggatctggtcttt 8084 Query: 227 gtcatgtcattcatcaacaaatttcataaatttttgcctcaggaactatggtctttatct 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8085 gtcatgtcattcatcaacaaatttcataaatttttgcctcaggaactatggtctttatct 8144 Query: 287 attcaagacctcgaaattggccttgatatttacccagaaaatatagacgacgaacaggat 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8145 attcaagacctcgaaattggccttgatatttacccagaaaatatagacgacgaacaggat 8204 Query: 347 cttcctcagtattatgcagattatattccagcaagggaaattagacgctgccaggattac 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8205 cttcctcagtattatgcagattatattccagcaagggaaattagacgctgccaggattac 8264 Query: 407 tcaaatttactttatgttgtattaatggagctgactttgaatcgcaaatcgcatagcaca 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8265 tcaaatttactttatgttgtattaatggagctgactttgaatcgcaaatcgcatagcaca 8324 Query: 467 ttgcaatccctgcagactttattcaaagcattcaaactaatatctgaattgagacataaa 526 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 8325 ttgcaatccctgcagacttcatccaaagcattcaaactaatatctgaattgagacataaa 8384 Query: 527 ggggtgggaatttggatattctagaagaatggaagggccagtcaactttaaatgccgaac 586 ||||| ||||||||||||| |||| ||||||||||| |||||||||||||||||| |||| Sbjct: 8385 ggggt-ggaatttggatatcctag-agaatggaaggtccagtcaactttaaatgcggaac 8442 Query: 587 gcactaaattgtttgaccccaatgacactgaaactggtgatccttataatccctgaaat- 645 |||||||||||||||| | | ||||||||||| ||| ||||||| || || ||||| || Sbjct: 8443 gcactaaattgtttgaacacgatgacactgaagctgttgatcctaatcat-cctgagatc 8501 Query: 646 ttaacccccaacatttaccagtggactggaccaattgatcgggccctt 693 |||||||| ||||||||| |||||||| || |||||||||| |||||| Sbjct: 8502 ttaaccccaaacatttacaagtggact-gagcaattgatcgtgccctt 8548 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,145 Number of Sequences: 1807 Number of extensions: 15145 Number of successful extensions: 301 Number of sequences better than 1.0e-20: 1 length of query: 901 length of database: 10,358,551 effective HSP length: 16 effective length of query: 885 effective length of database: 10,329,639 effective search space: 9141730515 effective search space used: 9141730515 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)