BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZF12FM1.SCF screened BAC_end
         (1060 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1458                                                         759   0.0  

>3x_Contig1458 
          Length = 9817

 Score =  759 bits (383), Expect = 0.0
 Identities = 413/419 (98%), Gaps = 3/419 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   ctaacatttgacatataaaacccaaatactcattgccgttcttgtttgggtattatcctg 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6412 ctaacatttgacatataaaacccaaatactcattgccgttcttgtttgggtattatcctg 6471

                                                                        
Query: 146  aaatatcacgaatgcgacttgttgtttcacattagcttaaccgatacgcacacagtttta 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6472 aaatatcacgaatgcgacttgttgtttcacattagcttaaccgatacgcacacagtttta 6531

                                                                        
Query: 206  aatttttttatttttgtttttattctggataaattgttgatgttcttgaagtgaaagcac 265
            |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6532 aatttttttatcaatgtttttattctggataaattgttgatgttcttgaagtgaaagcac 6591

                                                                        
Query: 266  aatcagagggcttggacggtaatatttatgtgtaccatagtttcaacgagttggtagaaa 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6592 aatcagagggcttggacggtaatatttatgtgtaccatagtttcaacgagttggtagaaa 6651

                                                                        
Query: 326  ctggaatgctgttatttttaaatttaagaacaaagatgttgtggaatcaagaatgttgtt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6652 ctggaatgctgttatttttaaatttaagaacaaagatgttgtggaatcaagaatgttgtt 6711

                                                                        
Query: 386  gccgtacgtaagcttttttttcttttctttactcttc-tttttctatactattgttccat 444
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6712 gccgtacgtaagcttttttttcttttctttactcttcttttttctatactattgttccat 6771

                                                                       
Query: 445  accgtttattcgaaacagttccttgtgacatatattccatcactcttcaattaacgatt 503
            |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 6772 accgtttattcgaaacagtt-cttgtgacatatattccatcactc-tcaattaacgatt 6828


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,890
Number of Sequences: 1807
Number of extensions: 12890
Number of successful extensions: 145
Number of sequences better than 1.0e-20: 1
length of query: 1060
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1044
effective length of database: 10,329,639
effective search space: 10784143116
effective search space used: 10784143116
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)