BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZF12FM1.SCF screened BAC_end (1060 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1458 759 0.0 >3x_Contig1458 Length = 9817 Score = 759 bits (383), Expect = 0.0 Identities = 413/419 (98%), Gaps = 3/419 (0%) Strand = Plus / Plus Query: 86 ctaacatttgacatataaaacccaaatactcattgccgttcttgtttgggtattatcctg 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6412 ctaacatttgacatataaaacccaaatactcattgccgttcttgtttgggtattatcctg 6471 Query: 146 aaatatcacgaatgcgacttgttgtttcacattagcttaaccgatacgcacacagtttta 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6472 aaatatcacgaatgcgacttgttgtttcacattagcttaaccgatacgcacacagtttta 6531 Query: 206 aatttttttatttttgtttttattctggataaattgttgatgttcttgaagtgaaagcac 265 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6532 aatttttttatcaatgtttttattctggataaattgttgatgttcttgaagtgaaagcac 6591 Query: 266 aatcagagggcttggacggtaatatttatgtgtaccatagtttcaacgagttggtagaaa 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6592 aatcagagggcttggacggtaatatttatgtgtaccatagtttcaacgagttggtagaaa 6651 Query: 326 ctggaatgctgttatttttaaatttaagaacaaagatgttgtggaatcaagaatgttgtt 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6652 ctggaatgctgttatttttaaatttaagaacaaagatgttgtggaatcaagaatgttgtt 6711 Query: 386 gccgtacgtaagcttttttttcttttctttactcttc-tttttctatactattgttccat 444 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 6712 gccgtacgtaagcttttttttcttttctttactcttcttttttctatactattgttccat 6771 Query: 445 accgtttattcgaaacagttccttgtgacatatattccatcactcttcaattaacgatt 503 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct: 6772 accgtttattcgaaacagtt-cttgtgacatatattccatcactc-tcaattaacgatt 6828 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,890 Number of Sequences: 1807 Number of extensions: 12890 Number of successful extensions: 145 Number of sequences better than 1.0e-20: 1 length of query: 1060 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1044 effective length of database: 10,329,639 effective search space: 10784143116 effective search space used: 10784143116 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)