BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZF12RM1.SCF screened BAC_end
         (1006 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1351                                                         948   0.0  

>3x_Contig1351 
          Length = 9242

 Score =  948 bits (478), Expect = 0.0
 Identities = 524/538 (97%), Gaps = 1/538 (0%)
 Strand = Plus / Minus

                                                                        
Query: 75   cttgaagggaagacacccatggaggagttagaaagactttcagctgctagagtacccaaa 134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8946 cttgaagggaagacacccatggaggagttagaaagactttcagctgctagagtacccaaa 8887

                                                                        
Query: 135  aagaaagatttcatggacccaatcgaatcaatgttgcaggcaaagaaaaatatcgaaact 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8886 aagaaagatttcatggacccaatcgaatcaatgttgcaggcaaagaaaaatatcgaaact 8827

                                                                        
Query: 195  gaagttgtaaatgaagctggtgattcaagacctacaatacctatattattggagaagatt 254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8826 gaagttgtaaatgaagctggtgattcaagacctacaatacctatattattggagaagatt 8767

                                                                        
Query: 255  aaacattctagcatctataacgatcaaattaccaattcgtatatcataccagagagaata 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8766 aaacattctagcatctataacgatcaaattaccaattcgtatatcataccagagagaata 8707

                                                                        
Query: 315  gcgaaatatggtgaattagaatttgcactctctccggaagtttatcaggcgcttgagtat 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8706 gcgaaatatggtgaattagaatttgcactctctccggaagtttatcaggcgcttgagtat 8647

                                                                        
Query: 375  aaagacttctattctcaccaagctgcagcaataaactgcattcataagggagagaatgta 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 8646 aaagacttctattctcaccaagctgcagcaataaactgcattcataagggagagaatgtc 8587

                                                                        
Query: 435  ataatcacaacgtctacttcgtcgggaaaatctttaatctaccagttatttgcaatagac 494
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 8586 ataatcacaacgtctacttcgtcgggaaaatctttaatctaccagttatctgcaatagac 8527

                                                                        
Query: 495  gcactacttaaggattcacactctacgttcatgtacatattttcgacaaaagcttttaca 554
            |||||||| |||||| |||||||||||||||||||||||||| |||||||||||||  ||
Sbjct: 8526 gcactactcaaggatccacactctacgttcatgtacatatttccgacaaaagctttagca 8467

                                                                      
Query: 555  caagatctaaagagattattttaaaagctattgttccaagaaaccacaattggcacat 612
            ||||||| |||||||| |||| ||||||||||| ||||||| |||| ||||| |||||
Sbjct: 8466 caagatcaaaagagatcatttcaaaagctattg-tccaagataccagaattgtcacat 8410


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8227
Number of Sequences: 1807
Number of extensions: 8227
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 1006
length of database: 10,358,551
effective HSP length: 16
effective length of query: 990
effective length of database: 10,329,639
effective search space: 10226342610
effective search space used: 10226342610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)