BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG01FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1176 0.0
>3x_Contig1778
Length = 27694
Score = 1176 bits (593), Expect = 0.0
Identities = 629/637 (98%), Gaps = 3/637 (0%)
Strand = Plus / Plus
Query: 84 aacaaatctcttgaacgttggtattgaattgcttgtttcaatagttgcattaatctacca 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 aacaaatctcttgaacgttggtattgaattgcttgtttcaatagttgcattaatctacca 5611
Query: 144 cgaggaactaaatcattaggattaataaagtgagcgatgtgttcaaatgtggcctctctg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 cgaggaactaaatcattaggattaataaagtgagcgatgtgttcaaatgtggcctctctg 5671
Query: 204 gtaacgaaaggtgcatcattggagttttgaccacatacaatcaaggtagaaagctgcgat 263
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 gtaacgaaaggtgcagcattggagttttgaccacatacaatcaaggtagaaagctgcgat 5731
Query: 264 aataagtgttcaggttggaaagaggaaaaagagttggaatacatgacatcatttcctgtt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5732 aataagtgttcaggttggaaagaggaaaaagagttggaatacatgacatcatttcctgtt 5791
Query: 324 tgccactgtatttctgagtcatatttcattgtttgcagtgttagcaacgtatcccaaatc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 tgccactgtatttctgagtcatatttcattgtttgcagtgttagcaacgtatcccaaatc 5851
Query: 384 gagatcgtaggtctaatgacaagccttaataattccaaggccattcgtctatctgacatc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5852 gagatcgtaggtctaatgacaagccttaataattccaaggccattcgtctatctgacatc 5911
Query: 444 aaaatctcagagaaagccaaagtttgaattgcaactagcatttccacgcatatagttaac 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5912 aaaatctcagagaaagccaaagtttgaattgcaactagcatttccacgcatatagttaac 5971
Query: 504 ttaactatatcaacgtccttgaattcggacagacgtttcatcacgaaacctagtttctca 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5972 ttaactatatcaacgtccttgaattcggacagacgtttcatcacgaaacctagtttctca 6031
Query: 564 tattcagcgagaaagtggtcaattattgtggttgaaatgttgcgttttgttttgggtaat 623
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6032 tattcagcgagaaagtggtcaattattgtggttgaaatgttgcgttttgtttggggtaat 6091
Query: 624 tcgacatgtgataagtcacctgatagttcaagggactcgagaaatatggttagctgaacc 683
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 6092 tcgacatgtgataagtcacctgatagttcaagggactcgagaaatatgggtagctgaagc 6151
Query: 684 aatagaatccaccgtacagttggtaaaaacctaccct 720
||||| ||||| ||||||| |||| ||||||||||||
Sbjct: 6152 aatag-atccaacgtacag-tggt-aaaacctaccct 6185
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7649
Number of Sequences: 1807
Number of extensions: 7649
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)