BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZG02FM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1207 0.0
>3x_Contig1652
Length = 14842
Score = 1207 bits (609), Expect = 0.0
Identities = 690/713 (96%), Gaps = 3/713 (0%)
Strand = Plus / Minus
Query: 86 taatttcttcacaatttctacgcttgcatcgatctcctctacaataccagtcgcagctat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11935 taatttcttcacaatttctacgcttgcatcgatctcctctacaataccagtcgcagctat 11876
Query: 146 tctgaaacttccagttgtatcactgttagcaactatttgaacaccacagaaagtggtatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11875 tctgaaacttccagttgtatcactgttagcaactatttgaacaccacagaaagtggtatt 11816
Query: 206 tggcgagcactttgttc-atagaaagaagctgtacaataagcatgttctggagtatactt 264
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11815 tggcgagcacaagggaccatagaaagaagctgtacaataagcatgttctggagtatactt 11756
Query: 265 caacattctagtcctggttctagagtcactagtggtgtatattggtagagtttggaaacg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11755 caacattctagtcctggttctagagtcactagtggtgtatattggtagagtttggaaacg 11696
Query: 325 tctccaaccaagagataaaactaaaggatcatttgtcttgagaatctttttgtgccaacg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11695 tctccaaccaagagataaaactaaaggatcatttgtcttgagaatctttttgtgccaacg 11636
Query: 385 atgtcttctgactcttgcattaataattccgaacttcaattctgtgggaagaagacctcc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11635 atgtcttctgactcttgcattaataattccgaacttcaattctgtgggaagaagacctcc 11576
Query: 445 cataattactggatactttgggttgaaattttcgatgaattccataggaaccttatcgaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11575 cataattactggatactttgggttgaaattttcgatgaattccataggaaccttatcgaa 11516
Query: 505 gacaatacgaacataagacccagctttcataccttcgatttgttgcctttgttcaggagt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11515 gacaatacgaacataagacccagctttcataccttcgatttgttgcctttgttcaggagt 11456
Query: 565 catagattccagttcggctttattgatttctaattgtttagcaatcttagccttctgtaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11455 catagattccagttcggctttattgatttctaattgtttagcaatcttagccttctgtaa 11396
Query: 625 ttcgtaccaggtatcgtattcattttcagggtcttttccaaagttgtctccttctttcat 684
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 11395 ttcgtaccaggtatcgtattcattttcagggtcttctccaaagttgtctccttcttccat 11336
Query: 685 tttcgattgtaacctttatttctttttttttgcggcatttcattcacgctctttattctg 744
|| ||||||||||| |||||| ||||||||||||||| |||||||||||| || |||
Sbjct: 11335 ttcgaattgtaaccttaatttctctttttttgcggcattcaattcacgctcttcatcctg 11276
Query: 745 ggtcaaatccttttttttttcttctttcgaattaagccgaacgattcgttgct 797
|||||||||||| |||| |||||| |||||| | || ||||||||||||||||
Sbjct: 11275 ggtcaaatccttcttttcttcttc-ttcgaaatcag-cgaacgattcgttgct 11225
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8907
Number of Sequences: 1807
Number of extensions: 8907
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)